Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network. - Di Zhao 003; Jian Wang 021; Hongfei Lin; Zhihao Yang; Yijia Zhang 001 (J. Biomed. Informatics, 2019)

Relation path feature embedding based convolutional neural network method for drug discovery. - Di Zhao 003; Jian Wang 021; Shengtian Sang; Hongfei Lin; Jiabin Wen; Chunmei Yang (BMC Medical Informatics Decis. Mak., 2019)

Incorporating representation learning and multihead attention to improve biomedical cross-sentence n-ary relation extraction. - Di Zhao 003; Jian Wang 021; Yi-Jia Zhang 001; Xin Wang; Hongfei Lin; Zhihao Yang (BMC Bioinform., 2020)

Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition. - Peng Chen; Jian Wang 021; Hongfei Lin; Yijia Zhang 001; Zhihao Yang; Di Zhao 003; Hui Ma (BIBM, 2021)

Auto-learning Convolution-Based Graph Convolutional Network for Medical Relation Extraction. - Mengyuan Qian; Jian Wang 021; Hongfei Lin; Di Zhao 003; Yijia Zhang 001; Wentai Tang; Zhihao Yang (CCIR, 2021)

Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks. - Di Zhao 003; Jian Wang 021; Hongfei Lin; Xin Wang; Zhihao Yang; Yijia Zhang 001 (Appl. Soft Comput., 2021)

Improving biomedical word representation with locally linear embedding. - Di Zhao 003; Jian Wang 021; Yonghe Chu; Yijia Zhang 001; Zhihao Yang; Hongfei Lin (Neurocomputing, 2021)

Sentence representation with manifold learning for biomedical texts. - Di Zhao 003; Jian Wang 021; Hongfei Lin; Yonghe Chu; Yan Wang; Yi-Jia Zhang 001; Zhihao Yang (Knowl. Based Syst., 2021)

Syntactic Type-aware Graph Attention Network for Drug-drug Interactions and their Adverse Effects Extraction. - Peng Chen; Jian Wang 021; Hongfei Lin; Yichen Wang; Di Zhao 003; Yijia Zhang 001 (BIBM, 2022)

Refining electronic medical records representation in manifold subspace. - Bolin Wang; Yuanyuan Sun 002; Yonghe Chu; Di Zhao 003; Zhihao Yang; Jian Wang 021 (BMC Bioinform., 2022)

Manifold biomedical text sentence embedding. - Bolin Wang; Yuanyuan Sun 002; Yonghe Chu; Hongfei Lin; Di Zhao 003; Liang Yang 003; Chen Shen 001; Zhihao Yang; Jian Wang 021 (Neurocomputing, 2022)

A Scalable Embedding Based Neural Network Method for Discovering Knowledge From Biomedical Literature. - Shengtian Sang; Xiaoxia Liu; Xiaoyu Chen; Di Zhao 003 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Adversarial Transfer Learning for Biomedical Named Entity Recognition. - Yue Wu; Jiana Meng; Dandan Zhao; Di Zhao 003; Wen Su (ICIAI, 2023)

ADPG: Biomedical entity recognition based on Automatic Dependency Parsing Graph. - Yumeng Yang; Hongfei Lin; Zhihao Yang; Yijia Zhang 001; Di Zhao 003; Shuaiheng Huai (J. Biomed. Informatics, 2023)

Few-shot biomedical named entity recognition via knowledge-guided instance generation and prompt contrastive learning. - Peng Chen; Jian Wang 021; Hongfei Lin; Di Zhao 003; Zhihao Yang (Bioinform., 2023)

Biomedical document relation extraction with prompt learning and KNN. - Di Zhao 003; Yumeng Yang; Peng Chen; Jiana Meng; Shichang Sun; Jian Wang 021; Hongfei Lin (J. Biomed. Informatics, 2023)

Protein Complex Identification Based on Heterogeneous Protein Information Network. - Peixuan Zhou; Yi-Jia Zhang 001; Zeqian Li; Kuo Pang; Di Zhao 003 (J. Comput. Biol., 2023)

Transferring variational autoencoders with coarse-and-fine alignment for open set broad classification. - Shichang Sun; Yongdong Huang; Di Zhao 003; Yuhai Yu; Jiana Meng (Int. J. Mach. Learn. Cybern., 2023)

Few-shot biomedical relation extraction using data augmentation and domain information. - Bocheng Guo; Di Zhao 003; Xin Dong; Jiana Meng; Hongfei Lin (Neurocomputing, 2024)

Integrating graph convolutional networks to enhance prompt learning for biomedical relation extraction. - Bocheng Guo; Jiana Meng; Di Zhao 003; Xiangxing Jia; Yonghe Chu; Hongfei Lin (J. Biomed. Informatics, 2024)

LCDL: Classification of ICD codes based on disease label co-occurrence dependency and LongFormer with medical knowledge. - Yumeng Yang; Hongfei Lin; Zhihao Yang; Yijia Zhang 001; Di Zhao 003; Ling Luo 001 (Artif. Intell. Medicine, 2025)

Few-shot biomedical NER empowered by LLMs-assisted data augmentation and multi-scale feature extraction. - Di Zhao 003; Wenxuan Mu; Xiangxing Jia; Shuang Liu; Yonghe Chu; Jiana Meng; Hongfei Lin (BioData Min., 2025)

Exploring biomedical relation extraction by combining natural language inference and dual dependency trees. - Xueying Li; Di Zhao 003; Jiana Meng; Hongfei Lin (Expert Syst. Appl., 2025)