ProkProbePicker (PPP): a Fast Program to Extract 16S rRNA-Targeted Probes for Prokaryotes. - Dianhui Zhu; Yuriy Fofanov; Richard C. Willson; George E. Fox (METMBS, 2005)

A parallel computing algorithm for 16S rRNA probe design. - Dianhui Zhu; Yuriy Fofanov; Richard C. Willson; George E. Fox (J. Parallel Distributed Comput., 2006)

RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses. - Dianhui Zhu; George E. Fox; Sugoto Chakravarty (BMC Bioinform., 2007)