Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexes. - Simin Xia; Dianke Li; Xinru Deng; Zhongyang Liu; Huaqing Zhu; Yuan Liu; Dong Li 018 (Briefings Bioinform., 2024)

Graph neural network integrated with pretrained protein language model for predicting human-virus protein-protein interactions. - Linyang Jiang; Xiaodi Yang; Xiaokun Guo; Dianke Li; Jiajun Li; Stefan Wuchty; Wenyu Shi; Ziding Zhang (Briefings Bioinform., 2025)