Metavir: a web server dedicated to virome analysis. - Simon Roux; Michaël Faubladier; Antoine Mahul; Nils Paulhe; Aurélien Bernard; Didier Debroas; François Enault (Bioinform., 2011)

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. - Simon Roux; Jeremy Tournayre; Antoine Mahul; Didier Debroas; François Enault (BMC Bioinform., 2014)

A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data. - Alexandre Bazin; Didier Debroas; Engelbert Mephu Nguifo (J. Comput. Biol., 2019)

Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow? - Cécile Hilpert; Geneviève Bricheux; Didier Debroas (Briefings Bioinform., 2021)