Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction. - Diego A. A. Morais; Rita M. C. Almeida; Rodrigo J. S. Dalmolin (Bioinform., 2019)

TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves. - Milena A. Cardoso; Luis E. A. Rizzardi; Leonardo W. Kume; Clarice S. Groeneveld; Sheyla Trefflich; Diego A. A. Morais; Rodrigo J. S. Dalmolin; Bruce A. J. Ponder; Kerstin B. Meyer; Mauro A. A. Castro (Bioinform., 2022)

EURYALE: A versatile Nextflow pipeline for taxonomic classification and functional annotation of metagenomics data. - João Vitor Ferreira Cavalcante; Iara Dantas de Souza; Diego A. A. Morais; Rodrigo J. S. Dalmolin (CIBCB, 2024)