ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution. - Diego Darriba; Guillermo L. Taboada; Ramon Doallo; David Posada (Euro-Par Workshops, 2010)

HPC selection of models of DNA substitution. - Diego Darriba; Guillermo L. Taboada; Ramon Doallo; David Posada (CMSB, 2011)

ProtTest 3: fast selection of best-fit models of protein evolution. - Diego Darriba; Guillermo L. Taboada; Ramon Doallo; David Posada (Bioinform., 2011)

Boosting the Performance of Bayesian Divergence Time Estimation with the Phylogenetic Likelihood Library. - Diego Darriba; Andre J. Aberer; Tomás Flouri; Tracy A. Heath; Fernando Izquierdo-Carrasco; Alexandros Stamatakis (IPDPS Workshops, 2013)

jmodeltest.org: selection of nucleotide substitution models on the cloud. - Jose Manuel Santorum; Diego Darriba; Guillermo L. Taboada; David Posada (Bioinform., 2014)

High-performance computing selection of models of DNA substitution for multicore clusters. - Diego Darriba; Guillermo L. Taboada; Ramon Doallo; David Posada (Int. J. High Perform. Comput. Appl., 2014)

Prediction of missing sequences and branch lengths in phylogenomic data. - Diego Darriba; Michael Weiß; Alexandros Stamatakis (Bioinform., 2016)

Does the choice of nucleotide substitution models matter topologically? - Michael Hoff 001; Stefan Orf; Benedikt Riehm; Diego Darriba; Alexandros Stamatakis (BMC Bioinform., 2016)

Adapting Reproducible Research Capabilities to Resilient Distributed Calculations. - Manuel Aurelio Rodriguez Pascual; Christos Kanellopoulos; Antonio J. Rubio-Montero; Diego Darriba; Ognjen Prnjat; David Posada; Rafael Mayo-García (Int. J. Grid High Perform. Comput., 2016)

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. - Alexey M. Kozlov; Diego Darriba; Tomás Flouri; Benoit Morel; Alexandros Stamatakis (Bioinform., 2019)