PlnTFDB: an integrative plant transcription factor database. - Diego Mauricio Riaño-Pachón; Slobodan Ruzicic; Ingo Dreyer; Bernd Mueller-Roeber (BMC Bioinform., 2007)

QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR. - Samuel Arvidsson; Miroslaw Kwasniewski; Diego Mauricio Riaño-Pachón; Bernd Mueller-Roeber (BMC Bioinform., 2008)

GabiPD: the GABI primary database - a plant integrative 'omics' database. - Diego Mauricio Riaño-Pachón; Axel Nagel; Jost Neigenfind; Robert Wagner; Rico Basekow; Elke Weber; Bernd Mueller-Roeber; Svenja Diehl; Birgit Kersten (Nucleic Acids Res., 2009)

PlnTFDB: updated content and new features of the plant transcription factor database. - Paulino Pérez-Rodríguez; Diego Mauricio Riaño-Pachón; Luiz Gustavo Guedes Corrêa; Stefan A. Rensing; Birgit Kersten; Bernd Mueller-Roeber (Nucleic Acids Res., 2010)

ploidyNGS: visually exploring ploidy with Next Generation Sequencing data. - Renato Augusto Corrêa dos Santos; Gustavo H. Goldman; Diego Mauricio Riaño-Pachón (Bioinform., 2017)

ContFree-NGS: Removing Reads from Contaminating Organisms in Next Generation Sequencing Data. - Felipe Vaz Peres; Diego Mauricio Riaño-Pachón (BSB, 2021)

The experience of teaching introductory programming skills to bioscientists in Brazil. - Luíza Zuvanov; Ana Letycia Basso Garcia; Fernando Henrique Correr; Rodolfo Bizarria Jr.; Ailton Pereira da Costa Filho; Alisson Hayasi da Costa; Andréa T. Thomaz; Ana Lucia Mendes Pinheiro; Diego Mauricio Riaño-Pachón; Flavia Vischi Winck; Franciele Grego Esteves; Gabriel Rodrigues Alves Margarido; et al. (PLoS Comput. Biol., 2021)