Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases. - David M. A. Martin; Diego Miranda-Saavedra; Geoffrey J. Barton (Nucleic Acids Res., 2009)

BloodExpress: a database of gene expression in mouse haematopoiesis. - Diego Miranda-Saavedra; Subhajyoti De; Matthew W. B. Trotter; Sarah A. Teichmann; Berthold Göttgens (Nucleic Acids Res., 2009)

Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model. - Nicola Bonzanni; Abhishek Garg; K. Anton Feenstra; Judith Schütte; Sarah Kinston; Diego Miranda-Saavedra; Jaap Heringa; Ioannis Xenarios; Berthold Göttgens (Bioinform., 2013)