SIMBio: Searching and inferring colorful motifs in biological networks. - Diego P. Rubert; Eloi Araujo; Marco Aurelio Stefanes (BIBE, 2015)

A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. - Diego P. Rubert; Pedro Feijão; Marília D. V. Braga; Jens Stoye; Fábio Viduani Martinez (WABI, 2016)

Algorithms for Computing the Family-Free Genomic Similarity Under DCJ. - Diego P. Rubert; Gabriela Medeiros; Edna Ayako Hoshino; Marília D. V. Braga; Jens Stoye; Fábio Viduani Martinez (RECOMB-CG, 2017)

Approximating the DCJ distance of balanced genomes in linear time. - Diego P. Rubert; Pedro Feijão; Marília Dias Vieira Braga; Jens Stoye; Fábio Viduani Martinez (Algorithms Mol. Biol., 2017)

Computing the family-free DCJ similarity. - Diego P. Rubert; Edna Ayako Hoshino; Marília D. V. Braga; Jens Stoye; Fábio Viduani Martinez (BMC Bioinform., 2018)

On motifs in colored graphs. - Diego P. Rubert; Eloi Araujo; Marco Aurelio Stefanes; Jens Stoye; Fábio Viduani Martinez (CoRR, 2020)

Searching and inferring colorful topological motifs in vertex-colored graphs. - Diego P. Rubert; Eloi Araujo; Marco Aurelio Stefanes; Jens Stoye; Fábio Viduani Martinez (J. Comb. Optim., 2020)

Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphs. - Marco Aurelio Stefanes; Diego P. Rubert; José Soares (Theor. Comput. Sci., 2020)

Algorithms for Normalized Multiple Sequence Alignments. - Eloi Araujo; Luiz C. S. Rozante; Diego P. Rubert; Fábio Viduani Martinez (ISAAC, 2021)

Natural family-free genomic distance. - Diego P. Rubert; Fábio Viduani Martinez; Marília D. V. Braga (Algorithms Mol. Biol., 2021)

The potential of family-free rearrangements towards gene orthology inference. - Diego P. Rubert; Daniel Doerr; Marília D. V. Braga (J. Bioinform. Comput. Biol., 2021)

Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. - Diego P. Rubert; Marília D. V. Braga (WABI, 2022)

Algorithms for the genome median under a restricted measure of rearrangement. - Helmuth O. M. Silva; Diego P. Rubert; Eloi Araujo; Eckhard Steffen; Daniel Doerr; Fábio Viduani Martinez (RAIRO Oper. Res., 2023)

Efficient gene orthology inference via large-scale rearrangements. - Diego P. Rubert; Marília D. V. Braga (Algorithms Mol. Biol., 2023)