Alignment-free methods for metagenomic profiling. - Shanshan Gao; Diem-Trang Pham; Vinhthuy Phan (BMC Bioinform., 2015)

Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities. - Quang Tran 002; Diem-Trang Pham; Vinhthuy Phan (BMC Bioinform., 2017)

An accurate and fast alignment-free method for profiling microbial communities. - Diem-Trang Pham; Shanshan Gao; Vinhthuy Phan (J. Bioinform. Comput. Biol., 2017)

icHET: interactive visualization of cytoplasmic heteroplasmy. - Vinhthuy Phan; Diem-Trang Pham; Caroline Melton; Adam J. Ramsey; Bernie J. Daigle Jr.; Jennifer R. Mandel (Bioinform., 2019)

Representing bacteria with unique genomic signatures. - Diem-Trang Pham; Vinhthuy Phan (Frontiers Big Data, 2022)