Analysis of 4C-seq data: A comparison of methods. - Dimitrios Zisis; Pawel Krajewski; Maike Stam; Blaise Weber; Iris Hövel (J. Bioinform. Comput. Biol., 2020)

Experience With Managing Technical Debt in Scientific Software Development Using the EXA2PRO Framework. - Nikolaos Nikolaidis 003; Dimitrios Zisis; Apostolos Ampatzoglou; Alexander Chatzigeorgiou; Dimitrios Soudris (IEEE Access, 2021)

Using machine learning to guide the application of software refactorings: a preliminary exploration. - Nikolaos Nikolaidis 003; Dimitrios Zisis; Apostolos Ampatzoglou; Nikolaos Mittas; Alexander Chatzigeorgiou (MaLTeSQuE@ESEC/SIGSOFT FSE, 2022)