DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. - Georgios K. Georgakilas; Ioannis S. Vlachos; Konstantinos Zagganas; Thanasis Vergoulis; Maria D. Paraskevopoulou; Ilias Kanellos; Panayiotis Tsanakas; Dimitris Dellis; Athanasios Fevgas; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

Using physics-based pose predictions and free energy perturbation calculations to predict binding poses and relative binding affinities for FXR ligands in the D3R Grand Challenge 2. - Christina Athanasiou; Sofia Vasilakaki; Dimitris Dellis; Zoe Cournia (J. Comput. Aided Mol. Des., 2018)

NanoCrystal: A Web-Based Crystallographic Tool for the Construction of Nanoparticles Based on Their Crystal Habit. - Alexios Chatzigoulas; Konstantina Karathanou; Dimitris Dellis; Zoe Cournia (J. Chem. Inf. Model., 2018)

Correction to "NanoCrystal: A Web-Based Crystallographic Tool for the Construction of Nanoparticles Based on Their Crystal Habit". - Alexios Chatzigoulas; Konstantina Karathanou; Dimitris Dellis; Zoe Cournia (J. Chem. Inf. Model., 2019)

ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing. - Evangelos Karatzas; Juan Eiros Zamora; Emmanouil Athanasiadis; Dimitris Dellis; Zoe Cournia; George M. Spyrou (Bioinform., 2020)

FEPrepare: A Web-Based Tool for Automating the Setup of Relative Binding Free Energy Calculations. - Stamatia Zavitsanou; Alexandros Tsengenes; Michail Papadourakis; Giorgio Amendola; Alexios Chatzigoulas; Dimitris Dellis; Sandro Cosconati; Zoe Cournia (J. Chem. Inf. Model., 2021)