Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids. - Julien Dorier; Dimos Goundaroulis; Fabrizio Benedetti; Andrzej Stasiak (Bioinform., 2018)

KnotProt 2.0: a database of proteins with knots and other entangled structures. - Pawel Dabrowski-Tumanski; Pawel Rubach; Dimos Goundaroulis; Julien Dorier; Piotr Sulkowski; Kenneth C. Millett; Eric J. Rawdon; Andrzej Stasiak; Joanna I. Sulkowska (Nucleic Acids Res., 2019)

A Topological Selection of Folding Pathways from Native States of Knotted Proteins. - Agnese Barbensi; Naya Yerolemou; Oliver Vipond; Barbara I. Mahler; Pawel Dabrowski-Tumanski; Dimos Goundaroulis (Symmetry, 2021)