Efficient Unbound Docking of Rigid Molecules. - Dina Duhovny; Ruth Nussinov; Haim J. Wolfson (WABI, 2002)

BioInfo3D: a suite of tools for structural bioinformatics. - Maxim Shatsky; Oranit Dror; Dina Schneidman-Duhovny; Ruth Nussinov; Haim J. Wolfson (Nucleic Acids Res., 2004)

PatchDock and SymmDock: servers for rigid and symmetric docking. - Dina Schneidman-Duhovny; Yuval Inbar; Ruth Nussinov; Haim J. Wolfson (Nucleic Acids Res., 2005)

Structural similarity of genetically interacting proteins. - Oranit Dror; Dina Schneidman-Duhovny; Alexandra Shulman-Peleg; Ruth Nussinov; Haim J. Wolfson; Roded Sharan (BMC Syst. Biol., 2008)

Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. - Dina Schneidman-Duhovny; Oranit Dror; Yuval Inbar; Ruth Nussinov; Haim J. Wolfson (J. Comput. Biol., 2008)

FireDock: a web server for fast interaction refinement in molecular docking. - Efrat Mashiach; Dina Schneidman-Duhovny; Nelly Andrusier; Ruth Nussinov; Haim J. Wolfson (Nucleic Acids Res., 2008)

PharmaGist: a webserver for ligand-based pharmacophore detection. - Dina Schneidman-Duhovny; Oranit Dror; Yuval Inbar; Ruth Nussinov; Haim J. Wolfson (Nucleic Acids Res., 2008)

Algorithms for prediction of molecular interactions - Dina Schneidman (2008)

Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. - Oranit Dror; Dina Schneidman-Duhovny; Yuval Inbar; Ruth Nussinov; Haim J. Wolfson (J. Chem. Inf. Model., 2009)

FoXS: a web server for rapid computation and fitting of SAXS profiles. - Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali (Nucleic Acids Res., 2010)

Statistical Potential for Modeling and Ranking of Protein-Ligand Interactions. - Hao Fan 002; Dina Schneidman-Duhovny; John J. Irwin; Guang Qiang Dong; Brian K. Shoichet; Andrej Sali (J. Chem. Inf. Model., 2011)

ModBase, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Benjamin M. Webb; David T. Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C. Meng; Eric F. Pettersen; Conrad C. Huang; Ruchira S. Datta; Parthasarathy Sampathkumar; et al. (Nucleic Acids Res., 2011)

A method for integrative structure determination of protein-protein complexes. - Dina Schneidman-Duhovny; Andrea Rossi 005; Agustin Avila-Sakar; Seung Joong Kim; Javier A. Velázquez-Muriel; Pavel Strop; Hong Liang; Kristin A. Krukenberg; Maofu Liao; Ho Min Kim; Solmaz Sobhanifar; Volker Dötsch; et al. (Bioinform., 2012)

Optimized atomic statistical potentials: assessment of protein interfaces and loops. - Guang Qiang Dong; Hao Fan 002; Dina Schneidman-Duhovny; Ben M. Webb; Andrej Sali (Bioinform., 2013)

ModBase, a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Benjamin M. Webb; Guang Qiang Dong; Dina Schneidman-Duhovny; Hao Fan 002; Seung Joong Kim; Natalia Khuri; Yannick G. Spill; Patrick Weinkam; Michal Hammel; John A. Tainer; Michael Nilges; et al. (Nucleic Acids Res., 2014)

Memdock: an α-helical membrane protein docking algorithm. - Naama Hurwitz; Dina Schneidman-Duhovny; Haim J. Wolfson (Bioinform., 2016)

FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles. - Dina Schneidman-Duhovny; Michal Hammel; John A. Tainer; Andrej Sali (Nucleic Acids Res., 2016)

Discovering predisposing genes for hereditary breast cancer using deep learning. - Gal Passi; Sari Lieberman; Fouad Zahdeh; Omer Murik; Paul Renbaum; Rachel Beeri; Michal Linial; Dalit May; Ephrat Levy-Lahad; Dina Schneidman-Duhovny (Briefings Bioinform., 2024)

ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions. - Matan Halfon; Tomer Cohen; Raanan Fattal; Dina Schneidman-Duhovny (CoRR, 2024)

RhoMax: Computational Prediction of Rhodopsin Absorption Maxima Using Geometric Deep Learning. - Meitar Sela; Jonathan R. Church; Igor Schapiro; Dina Schneidman-Duhovny (J. Chem. Inf. Model., 2024)