Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10. - Douglas Teodoro; Julien Gobeill; Emilie Pasche; Dina Vishnyakova; Patrick Ruch; Christian Lovis (CLEF (Notebook Papers/LABs/Workshops), 2010)

Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining. - Douglas Teodoro; Emilie Pasche; Dina Vishnyakova; Julien Gobeill; Patrick Ruch; Christian Lovis (NTCIR, 2010)

BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval. - Julien Gobeill; Arnaud Gaudinat; Patrick Ruch; Emilie Pasche; Douglas Teodoro; Dina Vishnyakova (TREC, 2010)

Using Multimodal Mining to Drive Clinical Guidelines Development. - Emilie Pasche; Julien Gobeill; Douglas Teodoro; Dina Vishnyakova; Arnaud Gaudinat; Patrick Ruch; Christian Lovis (MIE, 2011)

BiTeM Group Report for TREC Chemical IR Track 2011. - Julien Gobeill; Arnaud Gaudinat; Patrick Ruch; Emilie Pasche; Douglas Teodoro; Dina Vishnyakova (TREC, 2011)

BiTeM Group Report for TREC Medical Records Track 2011. - Julien Gobeill; Arnaud Gaudinat; Patrick Ruch; Emilie Pasche; Douglas Teodoro; Dina Vishnyakova (TREC, 2011)

The gene normalization task in BioCreative III. - Zhiyong Lu; Hung-Yu Kao; Chih-Hsuan Wei; Minlie Huang; Jingchen Liu; Cheng-Ju Kuo; Chun-Nan Hsu; Richard Tzong-Han Tsai; Hong-Jie Dai; Naoaki Okazaki; Han-Cheol Cho; Martin Gerner; et al. (BMC Bioinform., 2011)

A User-Friendly Tool for Medical-Related Patent Retrieval. - Emilie Pasche; Julien Gobeill; Douglas Teodoro; Arnaud Gaudinat; Dina Vishnyakova; Christian Lovis; Patrick Ruch (EFMI-STC, 2012)

Pathogens and Gene Product Normalization in the Biomedical Literature. - Dina Vishnyakova; Emilie Pasche; Douglas Teodoro; Christian Lovis; Patrick Ruch (EFMI-STC, 2012)

An advanced search engine for patent analytics in medicinal chemistry. - Emilie Pasche; Julien Gobeill; Douglas Teodoro; Arnaud Gaudinat; Dina Vishnyakova; Christian Lovis; Patrick Ruch (MIE, 2012)

Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database. - Dina Vishnyakova; Emilie Pasche; Julien Gobeill; Arnaud Gaudinat; Christian Lovis; Patrick Ruch (MIE, 2012)

Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. - Dina Vishnyakova; Emilie Pasche; Patrick Ruch (Database J. Biol. Databases Curation, 2012)

Using a Question-Answering Approach in Machine Reading Task of Biomedical Texts about the Alzheimer Disease. - Dina Vishnyakova; Julien Gobeill; Patrick Ruch (CLEF (Working Notes), 2013)

Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature. - Dina Vishnyakova; Emilie Pasche; Christian Lovis; Patrick Ruch (EFMI-STC, 2013)

Khresmoi - Multilingual Semantic Search of Medical Text and Images. - Niraj Aswani; Thomas Beckers 002; Erich Birngruber; Célia Boyer; Andreas Burner; Jakub Bystron; Khalid Choukri; Sarah Cruchet; Hamish Cunningham; Jan Dedek; Ljiljana Dolamic; René Donner; et al. (MedInfo, 2013)

Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks. - Emilie Pasche; Julien Gobeill; Dina Vishnyakova; Patrick Ruch; Christian Lovis (MedInfo, 2013)

Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. - Julien Gobeill; Emilie Pasche; Dina Vishnyakova; Patrick Ruch (Database J. Biol. Databases Curation, 2013)

Electronic Processing of Informed Consents in a Global Pharmaceutical Company Environment. - Dina Vishnyakova; Julien Gobeill; Fatma Oezdemir-Zaech; Olivier Kreim; Thérèse Vachon; Thierry Cladé; Xavier Haenning; Dmitri Mikhailov; Patrick Ruch (MIE, 2014)

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. - Julien Gobeill; Emilie Pasche; Dina Vishnyakova; Patrick Ruch (Database J. Biol. Databases Curation, 2014)

Text mining strategies to support literature-based biocuration. - Dina Vishnyakova (2014)

Deep Question Answering for protein annotation. - Julien Gobeill; Arnaud Gaudinat; Emilie Pasche; Dina Vishnyakova; Pascale Gaudet; Amos Bairoch; Patrick Ruch (Database J. Biol. Databases Curation, 2015)

Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types. - Dina Vishnyakova; Raul Rodriguez-Esteban; Khan Ozol; Fabio Rinaldi 001 (BioTxtM@COLING 2016, 2016)

Report on the NTCIR-12 MedNLPDoc Task Results. - Dina Vishnyakova; Christophe Gaudet-Blavignac; Selen Bozkurt; David-Zacharie Issom; Renat Vishnyakov; Christian Lovis (NTCIR, 2016)

A new approach and gold standard toward author disambiguation in MEDLINE. - Dina Vishnyakova; Raul Rodriguez-Esteban; Fabio Rinaldi 001 (J. Am. Medical Informatics Assoc., 2019)

Revisiting the decay of scientific email addresses. - Raul Rodriguez-Esteban; Dina Vishnyakova; Fabio Rinaldi 001 (J. Assoc. Inf. Sci. Technol., 2022)