MHC: Peptide Analysis: Implications on the Immunogenicity of Hantaviruses' N protein. - Maurício Menegatti Rigo; Dinler Amaral Antunes; Gustavo Fioravanti Vieira; José Artur Bogo Chies (BSB, 2009)

Reconstruction of MHC Alleles by Cross Modeling and Structural Assessment. - Cassiana Chassot Fulber; Dinler Amaral Antunes; Maurício Menegatti Rigo; José Artur Bogo Chies; Marialva Sinigaglia; Gustavo Fioravanti Vieira (BIOCOMP, 2010)

CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes. - Marialva Sinigaglia; Dinler Amaral Antunes; Maurício Menegatti Rigo; José Artur Bogo Chies; Gustavo Fioravanti Vieira (Database J. Biol. Databases Curation, 2013)

Similaridade estrutural de complexos peptídeo-MHC como um indicador para a ocorrência de reatividade cruzada - Dinler Amaral Antunes (2014)

General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept. - Dinler A. Antunes; Didier Devaurs; Mark Moll; Gregory Lizée; Lydia E. Kavraki (BCB, 2018)

Native state of complement protein C3d analysed via hydrogen exchange and conformational sampling. - Didier Devaurs; Malvina Papanastasiou; Dinler A. Antunes; Jayvee R. Abella; Mark Moll; Daniel Ricklin; John D. Lambris; Lydia E. Kavraki (Int. J. Comput. Biol. Drug Des., 2018)

DINC-COVID: A webserver for ensemble docking with flexible SARS-CoV-2 proteins. - Sarah Hall-Swan; Didier Devaurs; Maurício Menegatti Rigo; Dinler A. Antunes; Lydia E. Kavraki; Geancarlo Zanatta (Comput. Biol. Medicine, 2021)

EnGens: a computational framework for generation and analysis of representative protein conformational ensembles. - Anja Conev; Maurício Menegatti Rigo; Didier Devaurs; André Faustino Fonseca; Hussain Kalavadwala; Martiela Vaz de Freitas; Cecilia Clementi; Geancarlo Zanatta; Dinler Amaral Antunes; Lydia E. Kavraki (Briefings Bioinform., 2023)

APE-Gen2.0: Expanding Rapid Class I Peptide-Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide Geometries. - Romanos Fasoulis; Maurício Menegatti Rigo; Gregory Lizée; Dinler A. Antunes; Lydia E. Kavraki (J. Chem. Inf. Model., 2024)