Symbolic to numerical conversion of DNA sequences using finite-context models. - Armando J. Pinho; Diogo Pratas; Paulo Jorge S. G. Ferreira; Sara P. Garcia (EUSIPCO, 2011)

Compressing the Human Genome Using Exclusively Markov Models. - Diogo Pratas; Armando J. Pinho (PACBB, 2011)

Complexity Profiles of DNA Sequences Using Finite-Context Models. - Armando J. Pinho; Diogo Pratas; Sara P. Garcia (USAB, 2011)

Computation of the Normalized Compression Distance of DNA Sequences using a Mixture of Finite-context Models. - Diogo Pratas; Armando J. Pinho; Sara P. Garcia (BIOINFORMATICS, 2012)

Compression of Whole Genome Alignments Using a Mixture of Finite-Context Models. - Luís M. O. de Matos; Diogo Pratas; Armando J. Pinho (ICIAR (1), 2012)

On the Detection of Unknown Locally Repeating Patterns in Images. - Diogo Pratas; Armando J. Pinho (ICIAR (1), 2012)

Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. - Diogo Pratas; Armando J. Pinho; Sara P. Garcia (PACBB, 2012)

A Genomic Distance for Assembly Comparison Based on Compressed Maximal Exact Matches. - Sara P. Garcia; João M. O. S. Rodrigues; Sérgio Santos; Diogo Pratas; Vera Afreixo; Carlos A. C. Bastos; Paulo Jorge S. G. Ferreira; Armando J. Pinho (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

A Compression Model for DNA Multiple Sequence Alignment Blocks. - Luís M. O. de Matos; Diogo Pratas; Armando J. Pinho (IEEE Trans. Inf. Theory, 2013)

Information Profiles for DNA Pattern Discovery. - Armando J. Pinho; Diogo Pratas; Paulo Jorge S. G. Ferreira (DCC, 2014)

A Conditional Compression Distance that Unveils Insights of the Genomic Evolution. - Diogo Pratas; Armando J. Pinho (DCC, 2014)

Exploring deep Markov models in genomic data compression using sequence pre-analysis. - Diogo Pratas; Armando J. Pinho (EUSIPCO, 2014)

A New Compressor for Measuring Distances among Images. - Armando J. Pinho; Diogo Pratas; Paulo Jorge S. G. Ferreira (ICIAR (1), 2014)

MFCompress: a compression tool for FASTA and multi-FASTA data. - Armando J. Pinho; Diogo Pratas (Bioinform., 2014)

Three minimal sequences found in Ebola virus genomes and absent from human DNA. - Raquel M. Silva; Diogo Pratas; Luísa Castro; Armando J. Pinho; Paulo Jorge S. G. Ferreira (Bioinform., 2015)

Authorship Attribution Using Relative Compression. - Armando J. Pinho; Diogo Pratas; Paulo Jorge S. G. Ferreira (DCC, 2016)

Efficient Compression of Genomic Sequences. - Diogo Pratas; Armando J. Pinho; Paulo Jorge S. G. Ferreira (DCC, 2016)

A Survey on Data Compression Methods for Biological Sequences. - Seyed Morteza Hosseini; Diogo Pratas; Armando J. Pinho (Inf., 2016)

Compression and analysis of genomic data - Diogo Pratas (2016)

Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome. - Diogo Pratas; Seyed Morteza Hosseini; Raquel M. Silva; Armando J. Pinho; Paulo Jorge S. G. Ferreira (IbPRIA, 2017)

On the Approximation of the Kolmogorov Complexity for DNA Sequences. - Diogo Pratas; Armando J. Pinho (IbPRIA, 2017)

On the Role of Inverted Repeats in DNA Sequence Similarity. - Seyed Morteza Hosseini; Diogo Pratas; Armando J. Pinho (PACBB, 2017)

Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences. - Diogo Pratas; Seyed Morteza Hosseini; Armando J. Pinho (PACBB, 2017)

Cryfa: A Tool to Compact and Encrypt FASTA Files. - Diogo Pratas; Seyed Morteza Hosseini; Armando J. Pinho (PACBB, 2017)

An Application of Data Compression Models to Handwritten Digit Classification. - Armando J. Pinho; Diogo Pratas (ACIVS, 2018)

Metagenomic composition analysis of sedimentary ancient DNA from the Isle of Wight. - Diogo Pratas; Armando J. Pinho (EUSIPCO, 2018)

NET-ASAR: A Tool for DNA Sequence Search Based on Data Compression. - Manuel Gaspar; Diogo Pratas; Armando J. Pinho (PACBB, 2018)

Compression of Amino Acid Sequences. - Diogo Pratas; Seyed Morteza Hosseini; Armando J. Pinho (PACBB, 2018)

A DNA Sequence Corpus for Compression Benchmark. - Diogo Pratas; Armando J. Pinho (PACBB, 2018)

Comparison of Compression-Based Measures with Application to the Evolution of Primate Genomes. - Diogo Pratas; Raquel M. Silva; Armando J. Pinho (Entropy, 2018)

Extended-alphabet finite-context models. - João M. Carvalho; Susana Brás; Diogo Pratas; Jacqueline Ferreira; Sandra C. Soares; Armando J. Pinho (Pattern Recognit. Lett., 2018)

A Probabilistic Method to Find and Visualize Distinct Regions in Protein Sequences. - Morteza Hosseini; Diogo Pratas; Armando J. Pinho (EUSIPCO, 2019)

Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes. - Diogo Pratas; Seyed Morteza Hosseini; Armando J. Pinho (PACBB, 2019)

GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences. - Diogo Pratas; Seyed Morteza Hosseini; Armando J. Pinho (PACBB, 2019)

Cryfa: a secure encryption tool for genomic data. - Seyed Morteza Hosseini; Diogo Pratas; Armando J. Pinho (Bioinform., 2019)

A Reference-Free Lossless Compression Algorithm for DNA Sequences Using a Competitive Prediction of Two Classes of Weighted Models. - Diogo Pratas; Seyed Morteza Hosseini; Jorge Miguel 002; Armando J. Pinho (Entropy, 2019)

Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model. - Jorge Miguel Silva; Eduardo Pinho; Sérgio Matos; Diogo Pratas (Entropy, 2020)

GTO: A toolkit to unify pipelines in genomic and proteomic research. - João Rafael Almeida; Armando J. Pinho; José Luís Oliveira; Olga Fajarda; Diogo Pratas (SoftwareX, 2020)

Persistent minimal sequences of SARS-CoV-2. - Diogo Pratas; Jorge Miguel Silva (Bioinform., 2021)

A semi-automatic methodology for analysing distributed and private biobanks. - João Rafael Almeida; Diogo Pratas; José Luís Oliveira (Comput. Biol. Medicine, 2021)

AC2: An Efficient Protein Sequence Compression Tool Using Artificial Neural Networks and Cache-Hash Models. - Milton Silva; Diogo Pratas; Armando J. Pinho (Entropy, 2021)

Automatic analysis of artistic paintings using information-based measures. - Jorge Miguel Silva; Diogo Pratas; Rui Antunes 002; Sérgio Matos; Armando J. Pinho (Pattern Recognit., 2021)

Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods. - Jorge Miguel Silva; Diogo Pratas; Tânia Caetano; Sérgio Matos (IbPRIA, 2022)

JARVIS2: a data compressor for large genome sequences. - Diogo Pratas; Armando J. Pinho (DCC, 2023)

Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications. - Jorge Miguel Silva; Diogo Pratas; Sérgio Matos (DoCEIS, 2023)

TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa. - João Carneiro 001; Rita P. Magalhães; Victor M. de la Oliva Roque; Manuel Simões; Diogo Pratas; Sergio F. Sousa (J. Comput. Aided Mol. Des., 2023)

Copy models for protein sequence compression. - Armando J. Pinho; Diogo Pratas (DCC, 2024)

An experimental sorting method for improving metagenomic data encoding. - Diogo Pratas; Armando J. Pinho (DCC, 2024)

A Sorting Tool for Improving FASTA Data Compression Tools. - Tiago Fonseca; Maria J. P. Sousa; Armando J. Pinho; Diogo Pratas (EUSIPCO, 2024)

Asensitive Compression-Based Method for Filtering Targeted FASTQ Sequencing Reads. - Maria J. P. Sousa; Armando J. Pinho; Diogo Pratas (EUSIPCO, 2024)

Improving the Generation of Viral Consensus Sequences Using Adaptive Models. - Maria J. P. Sousa; Armando J. Pinho; Diogo Pratas (EUSIPCO, 2024)

Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation. - Renato Soares; Luísa Azevedo; Vitor Vasconcelos; Diogo Pratas; Sergio F. Sousa; João Carneiro 001 (J. Chem. Inf. Model., 2024)

AIDetx: A Compression-Based Method for Identification of Machine-Learning Generated Text. - Leonardo Almeida; Pedro Rodrigues; Diogo Magalhães; Armando J. Pinho; Diogo Pratas (DCC, 2025)

Optimization of Data Compression Parameters Using Genetic Algorithms. - Armando J. Pinho; Diogo Pratas (DCC, 2025)

ECOmpress: A Web Tool for Boosting Energy Efficiency Through Data Compression. - Dinis Lei; Denis Yamunaque; Armando J. Pinho; Diogo Pratas (IbPRIA (2), 2025)

A Machine Learning Method for Authentication of Human Ancient Mitochondrial DNA. - Denis Yamunaque; Armando J. Pinho; Antti Sajantila; Diogo Pratas (IbPRIA (2), 2025)