A Statistical Theory of Sequence Alignment with Gaps. - Dirk Drasdo; Terence Hwa; Michael Lässig (ISMB, 1998)

Scaling Laws and Similarity Detection in Sequence Alignment with Gaps. - Dirk Drasdo; Terence Hwa; Michael Lässig (J. Comput. Biol., 2000)

An individual cell-based model of the growth regulation of epithelial cell-populations in-vitro. - Jörg Galle; Markus Loeffler; Dirk Drasdo (German Conference on Bioinformatics, 2003)

Coarse Graining in Simulated Cell Populations. - Dirk Drasdo (Adv. Complex Syst., 2005)

Emergence of Regulatory Networks in Simulated Evolutionary Processes. - Dirk Drasdo; Matthias Kruspe (Adv. Complex Syst., 2005)

Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment. - Kristin Missal; Michael A. Cross; Dirk Drasdo (Bioinform., 2006)

A cell-based simulation software for multi-cellular systems. - Stefan Hoehme; Dirk Drasdo (Bioinform., 2010)

Individual fates of mesenchymal stem cells in vitro. - Axel Krinner; Martin Hoffmann; Markus Loeffler; Dirk Drasdo; Jörg Galle (BMC Syst. Biol., 2010)

Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration. - Stefan Hoehme; Marc Brulport; Alexander Bauer; Essam Bedawy; Wiebke Schormann; Matthias Hermes; Verena Puppe; Rolf Gebhardt; Sebastian Zellmer; Michael Schwarz; Ernesto Bockamp; Tobias Timmel; et al. (Proc. Natl. Acad. Sci. USA, 2010)

Modeling Dynamics of Cell-to-Cell Variability in TRAIL-Induced Apoptosis Explains Fractional Killing and Predicts Reversible Resistance. - François Bertaux; Szymon Stoma; Dirk Drasdo; Grégory Batt (PLoS Comput. Biol., 2014)

TiQuant: software for tissue analysis, quantification and surface reconstruction. - Adrian Friebel; Johannes Neitsch; Tim Johann; Seddik Hammad; Jan G. Hengstler; Dirk Drasdo; Stefan Hoehme (Bioinform., 2015)

Inferring Growth Control Mechanisms in Growing Multi-cellular Spheroids of NSCLC Cells from Spatial-Temporal Image Data. - Nick Jagiella; Benedikt Müller 001; Margareta Müller; Irene E. Vignon-Clementel; Dirk Drasdo (PLoS Comput. Biol., 2016)

Tumor Cell Load and Heterogeneity Estimation From Diffusion-Weighted MRI Calibrated With Histological Data: an Example From Lung Cancer. - Yi Yin; Oliver Sedlaczek; Benedikt Müller 001; Arne Warth; Margarita Gonzalez-Vallinas; Bernd Lahrmann; Niels Grabe; Hans-Ulrich Kauczor; Kai Breuhahn; Irene E. Vignon-Clementel; Dirk Drasdo (IEEE Trans. Medical Imaging, 2018)

Automated Quantification of Amyloid Fibrils Morphological Features by Image Processing Techniques. - Yi Yin; Stéphanie Prigent; Joan Torrent; Human Rezaei; Dirk Drasdo; Marie Doumic (ISBI, 2019)

Quantitative cell-based model predicts mechanical stress response of growing tumor spheroids over various growth conditions and cell lines. - Paul Van Liedekerke; Johannes Neitsch; Tim Johann; Kevin Alessandri; Pierre Nassoy; Dirk Drasdo (PLoS Comput. Biol., 2019)

Guided interactive image segmentation using machine learning and color based data set clustering. - Adrian Friebel; Tim Johann; Dirk Drasdo; Stefan Hoehme (CoRR, 2020)

Guided interactive image segmentation using machine learning and color-based image set clustering. - Adrian Friebel; Tim Johann; Dirk Drasdo; Stefan Hoehme (Bioinform., 2022)

Quantitative modeling identifies critical cell mechanics driving bile duct lumen formation. - Paul Van Liedekerke; Lila Gannoun; Axelle Loriot; Tim Johann; Frédéric Lemaigre; Dirk Drasdo (PLoS Comput. Biol., 2022)

A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic procedures. - Irene E. Vignon-Clementel; Nick Jagiella; Jules Dichamp; Jérôme Kowalski; Wiltrud Lederle; Hendrik Laue; Fabian Kiessling; Oliver Sedlaczek; Dirk Drasdo (Frontiers Bioinform., 2023)