Identifikation biochemischer Reaktionsnetzwerke: Ein beobachterbasierter Ansatz (Identification of Biochemical Reaction Networks: An Observer based Approach). - Eric Bullinger; Dirk Fey; Marcello Farina; Rolf Findeisen (Autom., 2008)

Exact model reduction of combinatorial reaction networks. - Holger Conzelmann; Dirk Fey; Ernst Dieter Gilles (BMC Syst. Biol., 2008)

Feedback control strategies for spatial navigation revealed by dynamic modelling of learning in the Morris water maze. - Dirk Fey; Sean Commins; Eric Bullinger (J. Comput. Neurosci., 2011)

Bimodal Protein Distributions in Heterogeneous Oscillating Systems. - Maciej Dobrzynski; Dirk Fey; Lan K. Nguyen; Boris N. Kholodenko (CMSB, 2012)

Accurate prediction of kinase-substrate networks using knowledge graphs. - Vít Novácek; Gavin McGauran; David Matallanas; Adrián Vallejo Blanco; Piero Conca; Emir Muñoz; Luca Costabello; Kamalesh Kanakaraj; Muhammad Zeeshan Nawaz; Brian Walsh; Sameh K. Mohamed; Pierre-Yves Vandenbussche; et al. (PLoS Comput. Biol., 2020)

Integration of Clinical Information and Imputed Aneuploidy Scores to Enhance Relapse Prediction in Early Stage Lung Cancer Patients. - Mohan Timilsina; Samuele Bousi; Dirk Fey; Adrianna Janik; Maria Torrente; Mariano Provencio; Alberto Bermúdez; Enric Carcereny; Luca Costabello; Delvys Rodriguez Abreu; Manuel Cobo; Rafael Castro; et al. (AMIA, 2022)

Synergy between imputed genetic pathway and clinical information for predicting recurrence in early stage non-small cell lung cancer. - Mohan Timilsina; Dirk Fey; Samuele Buosi; Adrianna Janik; Luca Costabello; Enric Carcereny; Delvys Rodriguez Abreu; Manuel Cobo; Rafael Castro; Reyes Bernabé; Pasquale Minervini; Maria Torrente; et al. (J. Biomed. Informatics, 2023)

Boosting predictive models and augmenting patient data with relevant genomic and pathway information. - Samuele Buosi; Mohan Timilsina; Maria Torrente; Mariano Provencio; Dirk Fey; Vít Novácek (Comput. Biol. Medicine, 2024)

Machine learning estimated probability of relapse in early-stage non-small-cell lung cancer patients with aneuploidy imputation scores and knowledge graph embeddings. - Samuele Buosi; Mohan Timilsina; Adrianna Janik; Luca Costabello; Maria Torrente; Mariano Provencio; Dirk Fey; Vít Novácek (Expert Syst. Appl., 2024)