Robust estimation of the noise variance from background MR data. - Jan Sijbers; Arnold J. den Dekker; Dirk H. J. Poot; Robert Bos; Marleen Verhoye; Nadja Van Camp; Annemie van der Linden (Image Processing, 2006)

Susceptibility correction for improved tractography using high field DT-EPI. - Wouter Pintjens; Dirk H. J. Poot; Marleen Verhoye; Annemarie van der Linden; Jan Sijbers (Image Processing, 2008)

An exploration of spatial similarities in temporal noise spectra in fMRI measurements. - Dirk H. J. Poot; Jan Sijbers; Arnold J. den Dekker (Image Processing, 2008)

On the construction of a ground truth framework for evaluating voxel-based diffusion tensor MRI analysis methods. - Wim Van Hecke; Jan Sijbers; Steve De Backer; Dirk H. J. Poot; Paul M. Parizel; Alexander Leemans (NeuroImage, 2009)

Likelihood-Based Hypothesis Tests for Brain Activation Detection From MRI Data Disturbed by Colored Noise: A Simulation Study. - Arnold J. den Dekker; Dirk H. J. Poot; Robert Bos; Jan Sijbers (IEEE Trans. Medical Imaging, 2009)

Segmentation Based Noise Variance Estimation from Background MRI Data. - Jeny Rajan; Dirk H. J. Poot; Jaber Juntu; Jan Sijbers (ICIAR (1), 2010)

Adaptive Noise Filtering for Accurate and Precise Diffusion Estimation in Fiber Crossings. - Matthan W. A. Caan; Ganesh Khedoe; Dirk H. J. Poot; Arjan den Dekker; Sílvia Delgado Olabarriaga; Kees Grimbergen; Lucas J. van Vliet; Frans Vos (MICCAI (1), 2010)

General and Efficient Super-Resolution Method for Multi-slice MRI. - Dirk H. J. Poot; Vincent Van Meir; Jan Sijbers (MICCAI (1), 2010)

Estimation of Diffusion Properties in Crossing Fiber Bundles. - Matthan W. A. Caan; Ganesh Khedoe; Dirk H. J. Poot; Arjan den Dekker; Sílvia Delgado Olabarriaga; Kees Grimbergen; Lucas J. van Vliet; Frans M. Vos (IEEE Trans. Medical Imaging, 2010)

Optimal Experimental Design for Diffusion Kurtosis Imaging. - Dirk H. J. Poot; Arnold J. den Dekker; Eric Achten; Marleen Verhoye; Jan Sijbers (IEEE Trans. Medical Imaging, 2010)

Optimized workflow for diffusion kurtosis imaging of newborns. - Maryna Kudzinava; Dirk H. J. Poot; Annemarie Plaisier; Jan Sijbers (ISBI, 2011)

Improved Tissue Segmentation by Including an MR Acquisition Model. - Dirk H. J. Poot; Marleen de Bruijne; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen (MBIA, 2011)

Super-resolution reconstruction of whole-body MRI mouse data: An interactive approach. - Artem Khmelinskii; Esben Plenge; Peter Kok; Oleh Dzyubachyk; Dirk H. J. Poot; E. Suidgeest; Charl P. Botha; Wiro J. Niessen; Louise van der Weerd; Erik Meijering; Boudewijn P. F. Lelieveldt (ISBI, 2012)

Super-resolution in MRI: better images faster? - Esben Plenge; Dirk H. J. Poot; Monique Bernsen; Gyula Kotek; Gavin Houston; Piotr Wielopolski; Louise van der Weerd; Wiro J. Niessen; Erik Meijering (Image Processing, 2012)

Microstructural changes observed with DKI in a transgenic Huntington rat model: Evidence for abnormal neurodevelopment. - Ines Blockx; Geert De Groof; Marleen Verhoye; Johan Van Audekerke; Kerstin Raber; Dirk H. J. Poot; Jan Sijbers; Alexander P. Osmand; Stephan Von Hörsten; Annemie van der Linden (NeuroImage, 2012)

Improved Myocardial Scar Characterization by Super-Resolution Reconstruction in Late Gadolinium Enhanced MRI. - Oleh Dzyubachyk; Qian Tao; Dirk H. J. Poot; Hildo J. Lamb; Katja Zeppenfeld; Boudewijn P. F. Lelieveldt; Rob J. van der Geest (MICCAI (3), 2013)

Groupwise Registration for Correcting Subject Motion and Eddy Current Distortions in Diffusion MRI Using a PCA Based Dissimilarity Metric. - Wyke Huizinga; Coert T. Metz; Dirk H. J. Poot; Meike de Groot; Wiro J. Niessen; Alexander Leemans; Stefan Klein 001 (CDMRI/MMBC@MICCAI, 2013)

Super-Resolution Reconstruction Using Cross-Scale Self-similarity in Multi-slice MRI. - Esben Plenge; Dirk H. J. Poot; Wiro J. Niessen; Erik Meijering (MICCAI (3), 2013)

Local appearance features for robust MRI brain structure segmentation across scanning protocols. - Hakim C. Achterberg; Dirk H. J. Poot; Fedde van der Lijn; Meike W. Vernooij; Mohammad Arfan Ikram; Wiro J. Niessen; Marleen de Bruijne (Image Processing, 2013)

Bias correction of maximum likelihood estimation in quantitative MRI. - Dirk H. J. Poot; Gyula Kotek; Wiro J. Niessen; Stefan Klein 001 (Image Processing, 2013)

Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen. - Jean-Marie Guyader; Livia Bernardin; Naomi H. M. Douglas; Dirk H. J. Poot; Wiro J. Niessen; Stefan Klein 001 (Image Processing, 2014)

Fast Multidimensional B-spline Interpolation Using Template Metaprogramming. - Wyke Huizinga; Stefan Klein 001; Dirk H. J. Poot (WBIR, 2014)

Non-rigid Groupwise Image Registration for Motion Compensation in Quantitative MRI. - Wyke Huizinga; Dirk H. J. Poot; Jean-Marie Guyader; Henk Smit; Matthijs van Kranenburg; Robert Jan van Geuns; André Uitterdijk; Heleen M. M. van Beusekom; Bram F. Coolen; Alexander Leemans; Wiro J. Niessen; Stefan Klein 001 (WBIR, 2014)

CSF contamination-invariant statistics in diffusion-weighted MRI. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; Meike de Groot; Meike W. Vernooij; Wiro J. Niessen; Lucas J. van Vliet; Frans M. Vos (ISBI, 2015)

High resolution T1 estimation from multiple low resolution magnetic resonance images. - Gwendolyn Van Steenkiste; Dirk H. J. Poot; Ben Jeurissen; Arnold J. den Dekker; Jan Sijbers (ISBI, 2015)

Rank-2 model-order selection in diffusion tensor MRI: Infromation complexity based on the total Kullback-Leibler divergence. - Jianfei Yang; Dirk H. J. Poot; Matthan W. A. Caan; Frans M. Vos; Lucas J. van Vliet (ISBI, 2015)

Estimating diffusion properties in complex fiber configurations based on structure-adaptive multi-valued tensor-field filtering. - Jianfei Yang; Dirk H. J. Poot; Georgius A. M. Arkesteijn; Matthan W. A. Caan; Lucas J. van Vliet; Frans M. Vos (Image Processing, 2015)

Detecting Statistically Significant Differences in Quantitative MRI Experiments, Applied to Diffusion Tensor Imaging. - Dirk H. J. Poot; Stefan Klein 001 (IEEE Trans. Medical Imaging, 2015)

Total Correlation-Based Groupwise Image Registration for Quantitative MRI. - Jean-Marie Guyader; Wyke Huizinga; Valerio Fortunati; Dirk H. J. Poot; Matthijs van Kranenburg; Jifke F. Veenland; Margarethus M. Paulides; Wiro J. Niessen; Stefan Klein 001 (CVPR Workshops, 2016)

Modeling the brain morphology distribution in the general aging population. - Wyke Huizinga; Dirk H. J. Poot; Gennady V. Roshchupkin; Esther E. Bron; Mohammad Arfan Ikram; Meike W. Vernooij; Daniel Rueckert; Wiro J. Niessen; Stefan Klein 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

PCA-based groupwise image registration for quantitative MRI. - Wyke Huizinga; Dirk H. J. Poot; Jean-Marie Guyader; R. Klaassen; Bram F. Coolen; Matthijs van Kranenburg; Robert Jan van Geuns; André Uitterdijk; Mathias Polfliet; Jef Vandemeulebroucke; Alexander Leemans; Wiro J. Niessen; et al. (Medical Image Anal., 2016)

Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; M. Niestijl; Meike W. Vernooij; Wiro J. Niessen; Lucas J. van Vliet; Frans M. Vos (ISBI, 2017)

Stochastic optimization with randomized smoothing for image registration. - Wei Sun 014; Dirk H. J. Poot; Ihor Smal; Xuan Yang; Wiro J. Niessen; Stefan Klein 001 (Medical Image Anal., 2017)

Averaged Stochastic Optimization for Medical Image Registration Based on Variance Reduction. - Wei Sun 014; Dirk H. J. Poot; Xuan Yang; Wiro J. Niessen; Stefan Klein 001 (WBIR, 2018)

A spatio-temporal reference model of the aging brain. - Wyke Huizinga; Dirk H. J. Poot; Meike W. Vernooij; Gennady Roshchupkin; Esther Bron; Mohammad Arfan Ikram; Daniel Rueckert; Wiro J. Niessen; Stefan Klein 001 (NeuroImage, 2018)

APIR-Net: Autocalibrated Parallel Imaging Reconstruction Using a Neural Network. - Chaoping Zhang; Florian Dubost; Marleen de Bruijne; Stefan Klein 001; Dirk H. J. Poot (MLMIR@MICCAI, 2019)

Groupwise Multichannel Image Registration. - Jean-Marie Guyader; Wyke Huizinga; Valerio Fortunati; Dirk H. J. Poot; Jifke F. Veenland; Margarethus M. Paulides; Wiro J. Niessen; Stefan Klein 001 (IEEE J. Biomed. Health Informatics, 2019)

Joint Maximum Likelihood Estimation of Motion and T1 Parameters from Magnetic Resonance Images in a Super-resolution Framework: a Simulation Study. - Quinten Beirinckx; Gabriel Ramos-Llordén; Ben Jeurissen; Dirk H. J. Poot; Paul M. Parizel; Marleen Verhoye; Jan Sijbers; Arnold J. den Dekker (Fundam. Informaticae, 2020)

Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions. - Georgius A. M. Arkesteijn; Dirk H. J. Poot; Mohammad Arfan Ikram; Wiro J. Niessen; Lucas J. van Vliet; Meike W. Vernooij; Frans M. Vos (IEEE Trans. Medical Imaging, 2020)

An Efficient Method for Multi-Parameter Mapping in Quantitative MRI Using B-Spline Interpolation. - Willem van Valenberg; Stefan Klein 001; Frans M. Vos; Kirsten Koolstra; Lucas J. van Vliet; Dirk H. J. Poot (IEEE Trans. Medical Imaging, 2020)

Multi-contrast multi-shot EPI for accelerated diffusion MRI. - Banafshe Shafieizargar; Ben Jeurissen; Dirk H. J. Poot; Arnold J. den Dekker; Jan Sijbers (EMBC, 2021)

Differences Between MR Brain Region Segmentation Methods: Impact on Single-Subject Analysis. - Wyke Huizinga; Dirk H. J. Poot; Elisabeth J. Vinke; F. Wenzel; Esther Bron; N. Toussaint; Christian Ledig; Henri A. Vrooman; Mohammad Arfan Ikram; Wiro J. Niessen; Meike W. Vernooij; Stefan Klein 001 (Frontiers Big Data, 2021)

Recurrent inference machines as inverse problem solvers for MR relaxometry. - Emanoel R. Sabidussi; Stefan Klein 001; Matthan W. A. Caan; Shabab Bazrafkan; Arnold J. den Dekker; Jan Sijbers; Wiro J. Niessen; Dirk H. J. Poot (Medical Image Anal., 2021)

Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping. - Quinten Beirinckx; Ben Jeurissen; Michele Nicastro; Dirk H. J. Poot; Marleen Verhoye; Arnold J. den Dekker; Jan Sijbers (Comput. Medical Imaging Graph., 2022)

Time efficiency analysis for undersampled quantitative MRI acquisitions. - Riwaj Byanju; Stefan Klein 001; Alexandra Cristobal-Huerta; Juan Antonio Hernández Tamames; Dirk H. J. Poot (Medical Image Anal., 2022)

Accuracy and repeatability of joint sparsity multi-component estimation in MR Fingerprinting. - Laura Nunez-Gonzalez; Martijn Nagtegaal; Dirk H. J. Poot; Jeroen de Bresser; Matthias J. P. van Osch; Juan Antonio Hernández Tamames; Frans M. Vos (NeuroImage, 2022)

A unified model for reconstruction and R2* mapping of accelerated 7T data using the quantitative recurrent inference machine. - Chaoping Zhang; Dimitrios Karkalousos; Pierre-Louis Bazin; Bram F. Coolen; Hugo Vrenken; Jan-Jakob Sonke; Birte U. Forstmann; Dirk H. J. Poot; Matthan W. A. Caan (NeuroImage, 2022)

Systematic review of reconstruction techniques for accelerated quantitative MRI. - Banafshe Shafieizargar; Riwaj Byanju; Jan Sijbers; Stefan Klein 001; Arnold J. den Dekker; Dirk H. J. Poot (Zenodo, 2022)

dtiRIM: A generalisable deep learning method for diffusion tensor imaging. - Emanoel R. Sabidussi; Stefan Klein 001; Ben Jeurissen; Dirk H. J. Poot (NeuroImage, 2023)

qMRI Diffuser: Quantitative T1 Mapping of the Brain Using a Denoising Diffusion Probabilistic Model. - Shishuai Wang; Hua Ma; Juan Antonio Hernández Tamames; Stefan Klein 001; Dirk H. J. Poot (DGM4MICCAI@MICCAI, 2024)

qMRI Diffusor: Quantitative T1 Mapping of the Brain using a Denoising Diffusion Probabilistic Model. - Shishuai Wang; Hua Ma; Juan Antonio Hernández Tamames; Stefan Klein 001; Dirk H. J. Poot (CoRR, 2024)