The Effects of Nested Primer Bindingg Sites on the Reproducibility of PCR: Mathematical Modeling and Simulation Studies. - Bernd Schierwater; Dirk Metzler; Katja Krüger; Bruno Streit (J. Comput. Biol., 1996)

Can One Estimate Distances from Pairwise Sequence Alignments? - Roland Fleißner; Dirk Metzler; Arndt von Haeseler (German Conference on Bioinformatics, 2000)

Statistical alignment based on fragment insertion and deletion models. - Dirk Metzler (Bioinform., 2003)

Robust E-Values for Gapped Local Alignments. - Dirk Metzler (J. Comput. Biol., 2006)

A Study on the Empirical Support for Prior Distributions on Phylogenetic Tree Topologies. - Lin Himmelmann; Dirk Metzler (German Conference on Bioinformatics, 2007)

TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration. - Lin Himmelmann; Dirk Metzler (Bioinform., 2009)

Statistical Alignment with a Sequence Evolution Model Allowing Rate Heterogeneity along the Sequence. - Ana Arribas-Gil; Dirk Metzler; Jean-Louis Plouhinec (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Bayesian sampling of evolutionarily conserved RNA secondary structures with pseudoknots. - Gero Doose; Dirk Metzler (Bioinform., 2012)

ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approach. - Dimitrios P. Lyras; Dirk Metzler (BMC Bioinform., 2014)

scrm: efficiently simulating long sequences using the approximated coalescent with recombination. - Paul R. Staab; Sha Zhu; Dirk Metzler; Gerton Lunter (Bioinform., 2015)

Coala: an R framework for coalescent simulation. - Paul R. Staab; Dirk Metzler (Bioinform., 2016)

PERGOLA: fast and deterministic linkage mapping of polyploids. - Fabian Grandke; Soumya Ranganathan; Nikkie van Bers; Jorn R. de Haan; Dirk Metzler (BMC Bioinform., 2017)

Modeling methylation dynamics with simultaneous changes in CpG islands. - Konrad Grosser; Dirk Metzler (BMC Bioinform., 2020)