hiHMM: Bayesian non-parametric joint inference of chromatin state maps. - Kyung-Ah Sohn; Joshua Wing Kei Ho; Djordje Djordjevic; Hyun-hwan Jeong; Peter J. Park; Ju Han Kim (Bioinform., 2015)

XGSA: A statistical method for cross-species gene set analysis. - Djordje Djordjevic; Kenro Kusumi; Joshua Wing Kei Ho (Bioinform., 2016)

Computational methods for analysing the regulation of genetic systems across species. - Djordje Djordjevic (2017)

C3: An R package for cross-species compendium-based cell-type identification. - Md Humayun Kabir; Djordje Djordjevic; Michael D. O'Connor; Joshua Wing Kei Ho (Comput. Biol. Chem., 2018)

iSyTE 2.0: a database for expression-based gene discovery in the eye. - Atul Kakrana; Andrian Yang; Deepti Anand; Djordje Djordjevic; S. Deepthi Ramachandruni; Abhyudai Singh; Hongzhan Huang; Joshua Wing Kei Ho; Salil A. Lachke (Nucleic Acids Res., 2018)

Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus. - Djordje Djordjevic; Joshua Y. S. Tang; Yun Xin Chen; Shu Lun Shannon Kwan; Raymond W. K. Ling; Gordon Qian; Chelsea Y. Y. Woo; Samuel J. Ellis; Joshua Wing Kei Ho (Comput. Biol. Chem., 2019)