Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency. - Anna G. Nazina; Dmitri A. Papatsenko (BMC Bioinform., 2003)

A Regulatory Network Controlling Drosophila Development. - Dmitri A. Papatsenko; Mike Levine (RECOMB, 2005)

Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression. - Valentina Boeva; Mireille Régnier; Dmitri A. Papatsenko; Vsevolod J. Makeev (Bioinform., 2006)

ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors. - Dmitri A. Papatsenko (Bioinform., 2007)

Enhancer Responses to Similarly Distributed Antagonistic Gradients in Development. - Robert P. Zinzen; Dmitri A. Papatsenko (PLoS Comput. Biol., 2007)

Time warping of evolutionary distant temporal gene expression data based on noise suppression. - Yury Goltsev; Dmitri A. Papatsenko (BMC Bioinform., 2009)

Temporal waves of coherent gene expression during Drosophila embryogenesis. - Ilya Papatsenko; Mike Levine; Dmitri A. Papatsenko (Bioinform., 2010)

NetExplore: a web server for modeling small network motifs. - Dmitri A. Papatsenko; Ihor R. Lemischka (Bioinform., 2015)

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis. - Ivan V. Kulakovskiy; Ilya E. Vorontsov; Ivan S. Yevshin; Ruslan N. Sharipov; Alla D. Fedorova; Eugene I. Rumynskiy; Yulia A. Medvedeva; Arturo Magana-Mora; Vladimir B. Bajic; Dmitri A. Papatsenko; Fedor A. Kolpakov; Vsevolod J. Makeev (Nucleic Acids Res., 2018)