Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNA. - Ludmila V. Danilova; Dmitri D. Pervouchine; Alexander V. Favorov; Andrey A. Mironov (J. Bioinform. Comput. Biol., 2006)

Low-Dimensional Maps Encoding Dynamics in Entorhinal Cortex and Hippocampus. - Dmitri D. Pervouchine; Theoden I. Netoff; Horacio G. Rotstein; John A. White; Mark O. Cunningham; Miles A. Whittington; Nancy Kopell (Neural Comput., 2006)

Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures. - Dmitri D. Pervouchine; Ekaterina Khrameeva; Marina Pichugina; Olexii Nikolaienko; Mikhail S. Gelfand; Petr Rubtsov; Andrey A. Mironov (RECOMB, 2012)

Intron-centric estimation of alternative splicing from RNA-seq data. - Dmitri D. Pervouchine; David G. Knowles; Roderic Guigó (Bioinform., 2013)

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. - Andrey A. Mironov; Stepan Denisov; Alexander Greß; Olga V. Kalinina; Dmitri D. Pervouchine (PLoS Comput. Biol., 2021)

RNAget: an API to securely retrieve RNA quantifications. - Sean Upchurch; Emilio Palumbo; Jeremy Adams; David Bujold; Guillaume Bourque; Jared Nedzel; Keenan Graham; Meenakshi S. Kagda; Pedro Assis; Benjamin C. Hitz; Emilio Righi; Roderic Guigó; et al. (Bioinform., 2023)