Visualization and Analysis of the Complete Yeast Genome. - Andreas Kaps; Klaus Heumann; Dmitrij Frishman; M. Bähr; Hans-Werner Mewes (German Conference on Bioinformatics - Selected Papers, 1996)

The MIPS Yeast Genome Database. - Kaj Albermann; M. Bähr; Dmitrij Frishman; A. Gleißner; Jean Hani; Klaus Heumann; Andreas Maierl; Alfred Zollner; Hans-Werner Mewes (German Conference on Bioinformatics, 1997)

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. - Dmitrij Frishman; Andrey A. Mironov; Hans-Werner Mewes; Mikhail S. Gelfand (German Conference on Bioinformatics, 1998)

Comprehensive, comprehensible, distributed and intelligent databases: current status. - Dmitrij Frishman; Klaus Heumann; Arthur M. Lesk; Hans-Werner Mewes (Bioinform., 1998)

MIPS: a database for protein sequences and complete genomes. - Hans-Werner Mewes; Jean Hani; Friedhelm Pfeiffer; Dmitrij Frishman (Nucleic Acids Res., 1998)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Klaus Heumann; Andreas Kaps; Klaus F. X. Mayer; Friedhelm Pfeiffer; S. Stocker; Dmitrij Frishman (Nucleic Acids Res., 1999)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Dmitrij Frishman; Christian Gruber; Birgitta Geier; Dirk Haase; Andreas Kaps; Kai Lemcke; Gertrud Mannhaupt; Friedhelm Pfeiffer; Christine M. Schüller; S. Stocker; B. Weil (Nucleic Acids Res., 2000)

Functional and structural genomics using PEDANT. - Dmitrij Frishman; Kaj Albermann; Jean Hani; Klaus Heumann; Agnes Metanomski; Alfred Zollner; Hans-Werner Mewes (Bioinform., 2001)

SNAPper: gene order predicts gene function. - Grigory Kolesov; Hans-Werner Mewes; Dmitrij Frishman (Bioinform., 2002)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Mokrejs; Burkhard Morgenstern; Martin Münsterkötter; Stephen Rudd; B. Weil (Nucleic Acids Res., 2002)

Conservation of protein-protein interactions among Ascomycota species. - Philipp Pagel; Hans-Werner Mewes; Dmitrij Frishman (German Conference on Bioinformatics, 2003)

Phylogenetic Web Profiler. - Philip Wong; Grigory Kolesov; Dmitrij Frishman; Walid A. Houry (Bioinform., 2003)

The PEDANT genome database. - Dmitrij Frishman; Martin Mokrejs; Denis Kosykh; Gabi Kastenmüller; Grigory Kolesov; Igor Zubrzycki; Christian Gruber; Birgitta Geier; Andreas Kaps; Kaj Albermann; Andreas Volz; Christian Wagner 008; et al. (Nucleic Acids Res., 2003)

No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions. - Marc N. Offman; Ramil N. Nurtdinov; Mikhail S. Gelfand; Dmitrij Frishman (BMC Bioinform., 2004)

STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins. - Matthias Heinig; Dmitrij Frishman (Nucleic Acids Res., 2004)

MIPS: analysis and annotation of proteins from whole genomes. - Hans-Werner Mewes; Clara Amid; Roland Arnold; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Philipp Pagel; Normann Strack; Volker Stümpflen; Jens Warfsmann; Andreas Ruepp (Nucleic Acids Res., 2004)

Mining sequence annotation databanks for association patterns. - Irena I. Artamonova; Goar Frishman; Mikhail S. Gelfand; Dmitrij Frishman (Bioinform., 2005)

The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. - Mark Borodovsky; Andrey Rzhetsky; Dmitrij Frishman (Bioinform., 2005)

The MIPS mammalian protein?Cprotein interaction database. - Philipp Pagel; Stefan Kovac; Matthias Oesterheld; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Pekka Mark; Volker Stümpflen; Hans-Werner Mewes; Andreas Ruepp; Dmitrij Frishman (Bioinform., 2005)

Alternative splicing and protein function. - A. D. Neverov; Irena I. Artamonova; Ramil N. Nurtdinov; Dmitrij Frishman; Mikhail S. Gelfand; Andrey A. Mironov (BMC Bioinform., 2005)

The PEDANT genome database in 2005. - M. Louise Riley; Thorsten Schmidt; Christian Wagner 008; Hans-Werner Mewes; Dmitrij Frishman (Nucleic Acids Res., 2005)

The DIMA web resource - exploring the protein domain network. - Philipp Pagel; Matthias Oesterheld; Volker Stümpflen; Dmitrij Frishman (Bioinform., 2006)

PROMPT: a protein mapping and comparison tool. - Thorsten Schmidt; Dmitrij Frishman (BMC Bioinform., 2006)

MIPS: analysis and annotation of proteins from whole genomes in 2005. - Hans-Werner Mewes; Dmitrij Frishman; Klaus F. X. Mayer; Martin Münsterkötter; Octave Noubibou; Philipp Pagel; Thomas Rattei; Matthias Oesterheld; Andreas Ruepp; Volker Stümpflen (Nucleic Acids Res., 2006)

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. - Andreas Ruepp; Octave Noubibou Doudieu; Jos van den Oever; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Christine Skornia; Steffi Wanka; Thomas Rattei; Philipp Pagel; et al. (Nucleic Acids Res., 2006)

Fold Designability, Distribution, and Disease. - Philip Wong; Dmitrij Frishman (PLoS Comput. Biol., 2006)

Co-evolving residues in membrane proteins. - Angelika Fuchs; Antonio J. Martin-Galiano; Matan Kalman; Sarel Jacob Fleishman; Nir Ben-Tal; Dmitrij Frishman (Bioinform., 2007)

Protein solubility: sequence based prediction and experimental verification. - Pawel Smialowski; Antonio J. Martin-Galiano; Aleksandra Mikolajka; Tobias Girschick; Tad A. Holak; Dmitrij Frishman (Bioinform., 2007)

Applying negative rule mining to improve genome annotation. - Irena I. Artamonova; Goar Frishman; Dmitrij Frishman (BMC Bioinform., 2007)

PEDANT genome database: 10 years online. - M. Louise Riley; Thorsten Schmidt; Irena I. Artamonova; Christian Wagner 008; Andreas Volz; Klaus Heumann; Hans-Werner Mewes; Dmitrij Frishman (Nucleic Acids Res., 2007)

MIPS: analysis and annotation of genome information in 2007. - Hans-Werner Mewes; Sabine Dietmann; Dmitrij Frishman; Richard Gregory 003; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Münsterkötter; Andreas Ruepp; Manuel Spannagl; Volker Stümpflen; Thomas Rattei (Nucleic Acids Res., 2008)

DIMA 2.0 - predicted and known domain interactions. - Philipp Pagel; Matthias Oesterheld; Oksana Tovstukhina; Normann Strack; Volker Stümpflen; Dmitrij Frishman (Nucleic Acids Res., 2008)

PEDANT covers all complete RefSeq genomes. - Mathias C. Walter; Thomas Rattei; Roland Arnold; Ulrich Güldener; Martin Münsterkötter; Karamfilka Nenova; Gabi Kastenmüller; Patrick Tischler; Andreas Wölling; Andreas Volz; Norbert Pongratz; Ralf Jost; et al. (Nucleic Acids Res., 2009)

Pitfalls of supervised feature selection. - Pawel Smialowski; Dmitrij Frishman; Stefan Kramer 001 (Bioinform., 2010)

TargetSpy: a supervised machine learning approach for microRNA target prediction. - Martin Sturm; Michael Hackenberg; David Langenberger; Dmitrij Frishman (BMC Bioinform., 2010)

The Negatome database: a reference set of non-interacting protein pairs. - Pawel Smialowski; Philipp Pagel; Philip Wong; Barbara Brauner; Irmtraud Dunger; Gisela Fobo; Goar Frishman; Corinna Montrone; Thomas Rattei; Dmitrij Frishman; Andreas Ruepp (Nucleic Acids Res., 2010)

Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions. - Andreas Kowarsch; Angelika Fuchs; Dmitrij Frishman; Philipp Pagel (PLoS Comput. Biol., 2010)

DIMA 3.0: Domain Interaction Map. - Qibin Luo; Philipp Pagel; Baiba Vilne; Dmitrij Frishman (Nucleic Acids Res., 2011)

MIPS: curated databases and comprehensive secondary data resources in 2010. - Hans-Werner Mewes; Andreas Ruepp; Fabian J. Theis; Thomas Rattei; Mathias C. Walter; Dmitrij Frishman; Karsten Suhre; Manuel Spannagl; Klaus F. X. Mayer; Volker Stümpflen; Alexey V. Antonov (Nucleic Acids Res., 2011)

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. - Eugene Kolker; Vural Özdemir; Lennart Martens; William Hancock; Gordon A. Anderson; Nathaniel Anderson; Sukru Aynacioglu; Ancha V. Baranova; Shawn R. Campagna; Rui Chen; John Choiniere; Stephen P. Dearth; et al. (Big Data, 2013)

Prediction of protein interaction types based on sequence and network features. - Florian Goebels; Dmitrij Frishman (BMC Syst. Biol., 2013)

RNAtips: analysis of temperature-induced changes of RNA secondary structure. - Andrey Chursov; Sebastian J. Kopetzky; Gennady Bocharov; Dmitrij Frishman; Alexander Shneider (Nucleic Acids Res., 2013)

QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis. - Dmitry N. Ivankov; Natalya S. Bogatyreva; Peter Hönigschmid; Bastian Dislich; Sebastian Hogl; Peer-Hendrik Kuhn; Dmitrij Frishman; Stefan F. Lichtenthaler (Nucleic Acids Res., 2013)

Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins. - Stefka Tyanova; Jürgen Cox; Jesper V. Olsen; Matthias Mann 002; Dmitrij Frishman (PLoS Comput. Biol., 2013)

Challenges in RNA virus bioinformatics. - Manja Marz; Niko Beerenwinkel; Christian Drosten; Markus Fricke; Dmitrij Frishman; Ivo L. Hofacker; Dieter Hoffmann; Martin Middendorf; Thomas Rattei; Peter F. Stadler; Armin Töpfer (Bioinform., 2014)

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis. - Philipp Blohm; Goar Frishman; Pawel Smialowski; Florian Goebels; Benedikt Wachinger; Andreas Ruepp; Dmitrij Frishman (Nucleic Acids Res., 2014)

Expitope: a web server for epitope expression. - Kerstin Haase; Silke Raffegerst; Dolores J. Schendel; Dmitrij Frishman (Bioinform., 2015)

A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea. - David M. Kristensen; Usman Saeed; Dmitrij Frishman; Eugene V. Koonin (BMC Bioinform., 2015)

Assessment of cancer and virus antigens for cross-reactivity in human tissues. - Victor Jaravine; Silke Raffegerst; Dolores J. Schendel; Dmitrij Frishman (Bioinform., 2017)

MutHTP: mutations in human transmembrane proteins. - A. Kulandaisamy; S. Binny Priya; R. Sakthivel; Svetlana Tarnovskaya; Ilya Bizin; Peter Hönigschmid; Dmitrij Frishman; M. Michael Gromiha (Bioinform., 2018)

SCOTCH: subtype A coreceptor tropism classification in HIV-1. - Hannah F. Löchel; Mona Riemenschneider; Dmitrij Frishman; Dominik Heider (Bioinform., 2018)

Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation. - Fei Qi 006; Magdalena Motz; Kirsten Jung; Jürgen Lassak; Dmitrij Frishman (PLoS Comput. Biol., 2018)

AllesTM: predicting multiple structural features of transmembrane proteins. - Peter Hönigschmid; Stephan Breimann; Martina Weigl; Dmitrij Frishman (BMC Bioinform., 2020)

Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins. - Jan Zaucha; Michael Heinzinger; A. Kulandaisamy; Evans Kataka; Óscar Llorian Salvádor; Petr Popov; Burkhard Rost; M. Michael Gromiha; Boris S. Zhorov; Dmitrij Frishman (Briefings Bioinform., 2021)

TCRpair: prediction of functional pairing between HLA-A*02: 01-restricted T-cell receptor α and β chains. - Anja Mösch; Dmitrij Frishman (Bioinform., 2021)

Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans. - Alma Davidson; Marina Parr; Franziska Totzeck; Alexander Churkin; Danny Barash; Dmitrij Frishman; Tamir Tuller (RECOMB-CG, 2024)