Object-oriented data handler for sequence analysis software development. - Andrey A. Ptitsyn; Dmitry A. Grigorovich (Comput. Appl. Biosci., 1995)

Integrated databases and computer systems for studying eukaryotic gene expression. - Nikolay A. Kolchanov; Mikhail P. Ponomarenko; Anatoly S. Frolov; Elena A. Ananko; Fedor A. Kolpakov; Elena V. Ignatieva; Olga A. Podkolodnaya; T. N. Goryachkovskaya; Irina L. Stepanenko; Tatyana I. Merkulova; V. V. Babenko; Y. V. Ponomarenko; et al. (Bioinform., 1999)

Methods for integration of heterogeneous information resources in molecular biology in the digital library GeneExpress. - Fedor A. Kolpakov; N. L. Podkolodnyi; Sergey V. Lavryushev; Dmitry A. Grigorovich; Mikhail P. Ponomarenko; Nikolay A. Kolchanov (Program. Comput. Softw., 2000)

Database of patterns PROF_PAT, used to detect local similarities. - Lily Ph. Nizolenko; Alexander G. Bachinsky; Andrey N. Naumochkin; Andrey A. Yarigin; Dmitry A. Grigorovich (Silico Biol., 2003)

PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. - Vladimir A. Ivanisenko; Sergey S. Pintus; Dmitry A. Grigorovich; Nikolay A. Kolchanov (Nucleic Acids Res., 2004)

SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition. - Dmitry Yu. Oshchepkov; Evgenii E. Vityaev 001; Dmitry A. Grigorovich; Elena V. Ignatieva; Tamara M. Khlebodarova (Nucleic Acids Res., 2004)

PDBSite: a database of the 3D structure of protein functional sites. - Vladimir A. Ivanisenko; Sergey S. Pintus; Dmitry A. Grigorovich; Nikolay A. Kolchanov (Nucleic Acids Res., 2005)

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. - Alexey V. Kochetov; Andrey Palyanov; Igor I. Titov; Dmitry A. Grigorovich; Akinori Sarai; Nikolay A. Kolchanov (BMC Bioinform., 2007)