Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks. - Dmitry A. Rodionov; Inna Dubchak; Adam P. Arkin; Eric J. Alm; Mikhail S. Gelfand (PLoS Comput. Biol., 2005)

Computational Reconstruction of Iron- and Manganese-Responsive Transcriptional Networks in α-Proteobacteria. - Dmitry A. Rodionov; Mikhail S. Gelfand; Jonathan D. Todd; Andrew R. J. Curson; Andrew W. B. Johnston (PLoS Comput. Biol., 2006)

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. - Leslie Klis McNeil; Claudia Reich; Ramy K. Aziz; Daniela Bartels; Matthew Cohoon; Terry Disz; Robert A. Edwards; Svetlana Gerdes; Kaitlyn Hwang; Michael Kubal; Gohar Rem Margaryan; Folker Meyer; et al. (Nucleic Acids Res., 2007)

Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk). - Mikhail S. Gelfand; Alexei E. Kazakov; Yuri D. Korostelev; Olga N. Laikova; Andrey A. Mironov; Aleksandra B. Rakhmaninova; Dmitry A. Ravcheev; Dmitry A. Rodionov; Alexei G. Vitreschak (ISBRA, 2009)

Evolution of Regulatory Motifs of Bacterial Transcription Factors. - Konstantin Yu. Gorbunov; Olga N. Laikova; Dmitry A. Rodionov; Mikhail S. Gelfand; Vassily A. Lyubetsky (Silico Biol., 2010)

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. - Pavel S. Novichkov; Olga N. Laikova; Elena S. Novichkova; Mikhail S. Gelfand; Adam P. Arkin; Inna Dubchak; Dmitry A. Rodionov (Nucleic Acids Res., 2010)

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. - Pavel S. Novichkov; Dmitry A. Rodionov; Elena D. Stavrovskaya; Elena S. Novichkova; Alexei E. Kazakov; Mikhail S. Gelfand; Adam P. Arkin; Andrey A. Mironov; Inna Dubchak (Nucleic Acids Res., 2010)

Automated Regulon Content Prediction and Estimation of PWM Quality. - Elena D. Stavrovskaya; Andrey A. Mironov; Dmitry A. Rodionov; Inna Dubchak; Pavel S. Novichkov (BIOINFORMATICS, 2012)

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. - Pavel S. Novichkov; Thomas S. Brettin; Elena S. Novichkova; Paramvir S. Dehal; Adam P. Arkin; Inna Dubchak; Dmitry A. Rodionov (Nucleic Acids Res., 2012)