Rhodobase, a meta-analytical tool for reconstructing gene regulatory networks in a model photosynthetic bacterium. - Oleg V. Moskvin; Dmitry Bolotin; Andrew Wang; Pavel S. Ivanov; Mark Gomelsky (Biosyst., 2011)

tcR: an R package for T cell receptor repertoire advanced data analysis. - Vadim Nazarov; Mikhail Pogorelyy; Ekaterina Komech; Ivan Zvyagin; Dmitry Bolotin; Mikhail Shugay; Dmitry Chudakov; Yuri B. Lebedev; Ilgar Z. Mamedov (BMC Bioinform., 2015)

Local fitness landscape of the green fluorescent protein. - Karen S. Sarkisyan; Dmitry Bolotin; Margarita V. Meer; Dinara R. Usmanova; Alexander S. Mishin; George V. Sharonov; Dmitry N. Ivankov; Nina G. Bozhanova; Mikhail S. Baranov; Onuralp Soylemez; Natalya S. Bogatyreva; Peter K. Vlasov; et al. (Nat., 2016)

Comment on 'rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing'. - Alexey N. Davydov; Dmitry Bolotin; Stanislav V. Poslavsky; Dmitry M. Chudakov (Briefings Bioinform., 2023)