MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. - Alexander V. Tyakht; Anna S. Popenko; Maxim S. Belenikin; Ilya A. Altukhov; Alexander V. Pavlenko; Elena S. Kostryukova; Oksana V. Selezneva; Andrei K. Larin; Irina Y. Karpova; Dmitry G. Alexeev (Source Code Biol. Medicine, 2012)

Bacterial rose garden for metagenomic SNP-based phylogeny visualization. - Dmitry G. Alexeev; Tanya Bibikova; Boris Kovarsky; Damir Melnikov; Alexander V. Tyakht; Vadim Govorun (BioData Min., 2015)

MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data. - Vladimir Ulyantsev; Sergey Kazakov; Veronika B. Dubinkina; Alexander V. Tyakht; Dmitry G. Alexeev (Bioinform., 2016)

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis. - Veronika B. Dubinkina; Dmitry S. Ischenko; Vladimir Ulyantsev; Alexander V. Tyakht; Dmitry G. Alexeev (BMC Bioinform., 2016)

Large scale analysis of amino acid substitutions in bacterial proteomics. - Dmitry S. Ischenko; Dmitry G. Alexeev; Egor Shitikov; Alexandra Kanygina; Maja Malakhova; Elena S. Kostryukova; Andrey Larin; Sergey Kovalchuk; Olga Pobeguts; Ivan Butenko; Nikolay A. Kolchanov; Ilya A. Altukhov; et al. (BMC Bioinform., 2016)

ResistoMap - online visualization of human gut microbiota antibiotic resistome. - Konstantin S. Yarygin; Boris Kovarsky; Tanya Bibikova; Damir Melnikov; Alexander V. Tyakht; Dmitry G. Alexeev (Bioinform., 2017)

Knomics-Biota - a system for exploratory analysis of human gut microbiota data. - Daria Efimova; Alexander V. Tyakht; Anna S. Popenko; Anatoly N. Vasilyev; Ilya A. Altukhov; Nikita V. Dovidchenko; Vera Odintsova; Natalya Klimenko; Robert Loshkarev; Maria Pashkova; Anna Elizarova; Viktoriya Voroshilova; et al. (BioData Min., 2018)