Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR. - Dmitry Pekurovsky; Ilya N. Shindyalov; Philip E. Bourne (PARCO, 2003)

A case study of high-throughput biological data processing on parallel platforms. - Dmitry Pekurovsky; Ilya N. Shindyalov; Philip E. Bourne (Bioinform., 2004)

The Encyclopedia of Life Project: Grid Software and Deployment. - Wilfred W. Li; Robert W. Byrnes; Jim Hayes; Adam Birnbaum; Vicente M. Reyes; Atif Shahab; Coleman Mosley; Dmitry Pekurovsky; Greg B. Quinn; Ilya N. Shindyalov; Henri Casanova; Larry Ang; et al. (New Gener. Comput., 2004)

Parallel performance of the coarse space linear vertex solver and low energy basis preconditioner for spectral/hp elements. - Leopold Grinberg; Dmitry Pekurovsky; Spencer J. Sherwin; George E. Karniadakis (Parallel Comput., 2009)

Ultrascalable Fourier transfroms in three dimensions. - Dmitry Pekurovsky (TG, 2011)

High-performance and scalable non-blocking all-to-all with collective offload on InfiniBand clusters: a study with parallel 3D FFT. - Krishna Chaitanya Kandalla; Hari Subramoni; Karen A. Tomko; Dmitry Pekurovsky; Sayantan Sur; Dhabaleswar K. Panda 001 (Comput. Sci. Res. Dev., 2011)

P3DFFT: A Framework for Parallel Computations of Fourier Transforms in Three Dimensions. - Dmitry Pekurovsky (SIAM J. Sci. Comput., 2012)

A Novel Functional Partitioning Approach to Design High-Performance MPI-3 Non-blocking Alltoallv Collective on Multi-core Systems. - Krishna Chaitanya Kandalla; Hari Subramoni; Karen Tomko; Dmitry Pekurovsky; Dhabaleswar K. Panda 001 (ICPP, 2013)

Scalable spectral transforms at petascale. - Dmitry Pekurovsky (XSEDE, 2013)

Designing Topology-Aware Communication Schedules for Alltoall Operations in Large InfiniBand Clusters. - Hari Subramoni; Krishna Chaitanya Kandalla; Jithin Jose; Karen Tomko; Karl W. Schulz; Dmitry Pekurovsky; Dhabaleswar K. Panda 001 (ICPP, 2014)

Designing Non-blocking Personalized Collectives with Near Perfect Overlap for RDMA-Enabled Clusters. - Hari Subramoni; Ammar Ahmad Awan; Khaled Hamidouche; Dmitry Pekurovsky; Akshay Venkatesh; Sourav Chakraborty 003; Karen Tomko; Dhabaleswar K. Panda 001 (ISC, 2015)

Porting scientific libraries to PGAS in XSEDE resources: practice and experience. - Antonio Gómez-Iglesias; Dmitry Pekurovsky; Khaled Hamidouche; Jie Zhang 045; Jérôme Vienne (XSEDE, 2015)