System for automatic registration of remote sensing images. - Dmitry V. Fedorov; Leila Maria Garcia Fonseca; Charles S. Kenney; Bangalore S. Manjunath (IGARSS, 2002)

Multi-Focus Imaging using Local Focus Estimation and Mosaicking. - Dmitry V. Fedorov; Baris Sumengen; B. S. Manjunath (ICIP, 2006)

Towards automated bioimage analysis: from features to semantics. - B. S. Manjunath; Baris Sumengen; Zhiqiang Bi; Jiyun Byun; Motaz A. El Saban; Dmitry V. Fedorov; Nath Vu (ISBI, 2006)

A biosegmentation benchmark for evaluation of bioimage analysis methods. - Elisa Drelie Gelasca; Boguslaw Obara; Dmitry V. Fedorov; Kristian Kvilekval; B. S. Manjunath (BMC Bioinform., 2009)

Bisque: a platform for bioimage analysis and management. - Kristian Kvilekval; Dmitry V. Fedorov; Boguslaw Obara; Ambuj K. Singh; B. S. Manjunath (Bioinform., 2010)

Bisque: Advances in Bioimage Databases. - Kristian Kvilekval; Dmitry V. Fedorov; Utkarsh Gaur; Steve Goff; Nirav C. Merchant; B. S. Manjunath; Ambuj K. Singh (IEEE Data Eng. Bull., 2012)

Simultaneous cell tracking and image alignment in 3D CLSM imagery of growing Arabidopsis thaliana sepals. - Rutger Henri Jacques Fick; Dmitry V. Fedorov; Adrienne H. K. Roeder; Bangalore S. Manjunath (ISBI, 2013)

Plant Image Segmentation and Annotation with Ontologies in BisQue. - Justin Preece; Justin Elser; Pankaj Jaiswal; Kristian Kvilekval; Dmitry V. Fedorov; B. S. Manjunath; Ryan Kitchen; Xu Xu; Dmitrios Trigkakis; Sinisa Todorovic; Seth Carbon (ICBO/BioCreative, 2016)

Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks. - Dimitrios Trigkakis; Justin Preece; Austin Meier; Justin Elser; Kristian Kvilekval; Dmitry V. Fedorov; B. S. Manjunath; Pankaj Jaiswal; Sinisa Todorovic (ICBO, 2018)

Genome Complexity Browser: Visualization and quantification of genome variability. - Alexander I Manolov; Dmitry Konanov; Dmitry V. Fedorov; Ivan Osmolovsky; Rinat Vereshchagin; Elena Ilina (PLoS Comput. Biol., 2020)

Bayesian compositional regression with microbiome features via variational inference. - Darren A. V. Scott; Ernest D. Benavente; Julian Libiseller-Egger; Dmitry V. Fedorov; Jody Phelan; Elena Ilina; Polina O. Tikhonova; Alexander Kudryavstev; Julia Galeeva; Taane G. Clark; Alex Lewin (BMC Bioinform., 2023)

CyVerse: Cyberinfrastructure for open science. - Tyson L. Swetnam; Parker B. Antin; Ryan Bartelme; Alexander Bucksch; David Camhy; Greg Chism; Illyoung Choi; Amanda M. Cooksey; Michele Cosi; Cindy Cowen; Michael Culshaw-Maurer; Robert Davey; et al. (PLoS Comput. Biol., 2024)