MProfiler: A Profile-Based Method for DNA Motif Discovery. - Doaa Altarawy; Mohamed A. Ismail; Sahar Mohamed Ghanem (PRIB, 2009)

PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference. - Doaa Altarawy; Fatma-Elzahraa Eid; Lenwood S. Heath (J. Comput. Biol., 2017)

DeTangle: A Framework for Interactive Prediction and Visualization of Gene Regulatory Networks. - Doaa Altarawy (2017)

Lascad : Language-agnostic software categorization and similar application detection. - Doaa Altarawy; Hossameldin Shahin; Ayat Mohammed; Na Meng 001 (J. Syst. Softw., 2018)

BCL: : Mol2D - a robust atom environment descriptor for QSAR modeling and lead optimization. - Oanh Vu; Jeffrey L. Mendenhall; Doaa Altarawy; Jens Meiler (J. Comput. Aided Mol. Des., 2019)

New Basis Set Exchange: An Open, Up-to-Date Resource for the Molecular Sciences Community. - Benjamin P. Pritchard; Doaa Altarawy; Brett T. Didier; Tara D. Gibson; Theresa L. Windus (J. Chem. Inf. Model., 2019)

PlantSimLab - a modeling and simulation web tool for plant biologists. - S. Ha; Elena S. Dimitrova; Stefan Hoops; Doaa Altarawy; Mitra Ansariola; D. Deb; Jane Glazebrook; R. Hillmer; Hossameldin Shahin; Fumiaki Katagiri; J. McDowell; Molly Megraw; et al. (BMC Bioinform., 2019)