Texture Based Classification and Segmentation of Tissues Using DT-CWT Feature Extraction Methods. - Dogu Baran Aydogan; Markus Hannula; Tuukka Arola; Prasun Dastidar; Jari A. K. Hyttinen (CBMS, 2008)

2D texture based classification, segmentation and 3D orientation estimation of tissues using DT-CWT feature extraction methods. - Dogu Baran Aydogan; Markus Hannula; Tuukka Arola; Prasun Dastidar; Jari A. K. Hyttinen (Data Knowl. Eng., 2009)

Binary image representation by contour trees. - Dogu Baran Aydogan; Jari A. K. Hyttinen (Image Processing, 2012)

Contour tree connectivity of binary images from algebraic graph theory. - Dogu Baran Aydogan; Jari A. K. Hyttinen (ICIP, 2013)

Analysis of Trabecular Bone Microstructure Using Contour Tree Connectivity. - Dogu Baran Aydogan; Niko Moritz; Hannu T. Aro; Jari A. K. Hyttinen (MICCAI (2), 2013)

Simulation of Microporous Architecture's Effects on Fluid Flow Characteristics in Cell Seeding. - Ashkan Bonabi; Dogu Baran Aydogan; Jari A. K. Hyttinen (UKSim, 2013)

Track Filtering via Iterative Correction of TDI Topology. - Dogu Baran Aydogan; Yonggang Shi (MICCAI (1), 2015)

Probabilistic Tractography for Topographically Organized Connectomes. - Dogu Baran Aydogan; Yonggang Shi (MICCAI (1), 2016)

Topographic Regularity for Tract Filtering in Brain Connectivity. - Junyan Wang; Dogu Baran Aydogan; Rohit Varma; Arthur W. Toga; Yonggang Shi (IPMI, 2017)

Tracking and validation techniques for topographically organized tractography. - Dogu Baran Aydogan; Yonggang Shi (NeuroImage, 2018)

Modeling topographic regularity in structural brain connectivity with application to tractogram filtering. - Junyan Wang; Dogu Baran Aydogan; Rohit Varma; Arthur W. Toga; Yonggang Shi (NeuroImage, 2018)

Limits to anatomical accuracy of diffusion tractography using modern approaches. - Kurt G. Schilling; Vishwesh Nath; Colin B. Hansen; Prasanna Parvathaneni; Justin A. Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; et al. (NeuroImage, 2019)

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - Kurt G. Schilling; François Rheault; Laurent Petit; Colin B. Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi Gomez; Marco Pizzolato; et al. (NeuroImage, 2021)

Parallel Transport Tractography. - Dogu Baran Aydogan; Yonggang Shi (IEEE Trans. Medical Imaging, 2021)

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. - Chiara Maffei; Gabriel Girard; Kurt G. Schilling; Dogu Baran Aydogan; Nagesh Adluru; Andrey Zhylka; Ye Wu 001; Matteo Mancini; Andac Hamamci; Alessia Sarica; Achille Teillac; Steven H. Baete; et al. (NeuroImage, 2022)

Why is the Winner the Best? - Matthias Eisenmann; Annika Reinke; Vivienn Weru; Minu Dietlinde Tizabi; Fabian Isensee; Tim J. Adler; Sharib Ali; Vincent Andrearczyk; Marc Aubreville; Ujjwal Baid; Spyridon Bakas; Niranjan Balu; et al. (CVPR, 2023)

brainlife.io: A decentralized and open source cloud platform to support neuroscience research. - Soichi Hayashi; Bradley Caron; Anibal Sólon Heinsfeld; Sophia Vinci-Booher; Brent C. McPherson; Daniel N. Bullock; Giulia Berto; J. Guiomar Niso; Sandra Hanekamp; Daniel Levitas; Lindsey Kitchell; Josiah Leong; et al. (CoRR, 2023)

Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. - Gabriel Girard; Jonathan Rafael-Patino; Raphaël Truffet; Dogu Baran Aydogan; Nagesh Adluru; Veena A. Nair; Vivek Prabhakaran; Barbara B. Bendlin; Andrew L. Alexander; Sara Bosticardo; Ilaria Gabusi; Mario Ocampo-Pineda; et al. (NeuroImage, 2023)

FreeSurfer 7 quality control: Key problem areas and importance of manual corrections. - Vesa Vahermaa; Dogu Baran Aydogan; Tuukka T. Raij; Reetta-Liina Armio; Heikki Laurikainen; Jari Saramäki; Jaana Suvisaari (NeuroImage, 2023)