PROMO: detection of known transcription regulatory elements using species-tailored searches. - Xavier Messeguer; Ruth Escudero; Domènec Farré; Oscar Núñez; Javier Martínez; M. Mar Albà (Bioinform., 2002)

Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN. - Domènec Farré; Roman Roset; Mario Huerta; José-Enrique Adsuara; Llorenç Roselló; M. Mar Albà; Xavier Messeguer (Nucleic Acids Res., 2003)

Prediction of Transcription Factor Binding Sites with PROMO v.3: Improving the Specificity of Weight Matrices and the Searching Process. - Domènec Farré; David García; M. Mar Albà; Xavier Messeguer (Spanish Bioinformatics Conference, 2004)

ABS: a database of Annotated regulatory Binding Sites from orthologous promoters. - Enrique Blanco; Domènec Farré; M. Mar Albà; Xavier Messeguer; Roderic Guigó (Nucleic Acids Res., 2006)

PEAKS: identification of regulatory motifs by their position in DNA sequences. - Nicolás Bellora; Domènec Farré; M. Mar Albà (Bioinform., 2007)