MitBASE: a comprehensive and integrated mitochondrial DNA database. - Marcella Attimonelli; N. Altamura; R. Benne; C. Boyen; A. Brennicke; A. Carone; J. M. Cooper; Domenica D'Elia; A. de Montalvo; B. de Pinto; Mariateresa De Robertis; Pawel Golik; et al. (Nucleic Acids Res., 1999)

Update of the Human MitBASE database. - Marcella Attimonelli; J. M. Cooper; Domenica D'Elia; A. de Montalvo; Mariateresa De Robertis; Heikki Lehväslaiho; S. B. Malladi; F. Memeo; K. Stevens; A. H. V. Schapira; Cecilia Saccone (Nucleic Acids Res., 1999)

KEYnet: a keywords database for biosequences functional organization. - Flavio Licciulli; Domenico Catalano; Domenica D'Elia; V. Lorusso; Marcella Attimonelli (Nucleic Acids Res., 1999)

MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status. - Marcella Attimonelli; N. Altamura; R. Benne; A. Brennicke; J. M. Cooper; Domenica D'Elia; A. de Montalvo; B. de Pinto; Mariateresa De Robertis; Pawel Golik; Volker Knoop; Cecilia Lanave; et al. (Nucleic Acids Res., 2000)

Update of KEYnet: a gene and protein names database for biosequences functional organisation. - Domenico Catalano; Flavio Licciulli; Domenica D'Elia; Marcella Attimonelli (Nucleic Acids Res., 2000)

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa. - Domenico Catalano; Flavio Licciulli; Antonio Turi; Giorgio Grillo; Cecilia Saccone; Domenica D'Elia (BMC Bioinform., 2006)

Mining Frequent Patterns of Biological Spaced Motifs. - Corrado Loglisci; Eliana Salvemini; Antonio Turi; Giorgio Grillo; Donato Malerba; Domenica D'Elia (SEBD, 2009)

The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community. - Domenica D'Elia; Andreas Gisel; Nils-Einar Eriksson; Sophia Kossida; Kimmo Mattila; Lubos Klucar; Erik Bongcam-Rudloff (BMC Bioinform., 2009)

Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining. - Antonio Turi; Corrado Loglisci; Eliana Salvemini; Giorgio Grillo; Donato Malerba; Domenica D'Elia (BMC Bioinform., 2009)

Mining Spatial Association Rules for Composite Motif Discovery. - Michelangelo Ceci; Corrado Loglisci; Eliana Salvemini; Domenica D'Elia; Donato Malerba (Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011)

Hierarchical and Overlapping Co-Clustering of mRNA: miRNA Interactions. - Gianvito Pio; Michelangelo Ceci; Corrado Loglisci; Domenica D'Elia; Donato Malerba (ECAI, 2012)

HOCCLUS2: A Biclustering Algorithm for the Discovery of miRNA: mRNA regulatory modules. - Gianvito Pio; Michelangelo Ceci; Domenica D'Elia; Corrado Loglisci; Donato Malerba (SEBD, 2013)

A Novel Biclustering Algorithm for the Discovery of Meaningful Biological Correlations between microRNAs and their Target Genes. - Gianvito Pio; Michelangelo Ceci; Domenica D'Elia; Corrado Loglisci; Donato Malerba (BMC Bioinform., 2013)

Network Reconstruction for the Identification of miRNA: mRNA Interaction Networks. - Gianvito Pio; Michelangelo Ceci; Domenica D'Elia; Donato Malerba (ECML/PKDD (3), 2014)

Learning to Combine miRNA Target Predictions: a Semi-supervised Ensemble Learning Approach. - Gianvito Pio; Michelangelo Ceci; Domenica D'Elia; Donato Malerba (SEBD, 2014)

Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach. - Gianvito Pio; Donato Malerba; Domenica D'Elia; Michelangelo Ceci (BMC Bioinform., 2014)

ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks. - Gianvito Pio; Michelangelo Ceci; Donato Malerba; Domenica D'Elia (BMC Bioinform., 2015)

The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes. - Paolo Romano 001; Ralf Hofestädt; Matthias Lange 001; Domenica D'Elia (BMC Bioinform., 2017)

Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation? - Susanne Hollmann; Teresa K. Attwood; Erik Bongcam-Rudloff; Deborah Duca; Domenica D'Elia; Christoph Endrullat; Marcus Frohme; Katrin Messerschmidt; Babette Regierer (ICT Innovations, 2018)

Arena-Idb: a platform to build human non-coding RNA interaction networks. - Vincenzo Bonnici; Giorgio De Caro; Giorgio Constantino; Sabino Liuni; Domenica D'Elia; Nicola Bombieri; Flavio Licciulli; Rosalba Giugno (BMC Bioinform., 2018)

Exploiting transfer learning for the reconstruction of the human gene regulatory network. - Paolo Mignone; Gianvito Pio; Domenica D'Elia; Michelangelo Ceci (Bioinform., 2020)

Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering. - Emanuele Pio Barracchia; Gianvito Pio; Domenica D'Elia; Michelangelo Ceci (BMC Bioinform., 2020)

The need for standardisation in life science research - an approach to excellence and trust. - Susanne Hollmann; Andreas Kremer; Spela Baebler; Christophe Trefois; Kristina Gruden; Witold R. Rudnicki; Weida Tong; Aleksandra Gruca; Erik Bongcam-Rudloff; Chris T. A. Evelo; Alina S. Nechyporenko; Marcus Frohme; et al. (F1000Research, 2020)

Ten simple rules on how to write a standard operating procedure. - Susanne Hollmann; Marcus Frohme; Christoph Endrullat; Andreas Kremer; Domenica D'Elia; Babette Regierer; Alina S. Nechyporenko (PLoS Comput. Biol., 2020)

Ten simple rules on how to develop a stakeholder engagement plan. - Susanne Hollmann; Babette Regierer; Jaele Bechis; Lesley Tobin; Domenica D'Elia (PLoS Comput. Biol., 2022)

Exploiting microRNA Expression Data for the Diagnosis of Disease Conditions and the Discovery of Novel Biomarkers. - Daniele Rosa; Antonio Pellicani; Gianvito Pio; Domenica D'Elia; Michelangelo Ceci (ISMIS, 2024)