Clustering Main Concepts from e-Mails. - Jesús S. Aguilar-Ruiz; Domingo S. Rodríguez-Baena; Paul R. Cohen; José Cristóbal Riquelme Santos (CAEPIA, 2003)

Neighborhood-Based Clustering of Gene-Gene Interactions. - Norberto Díaz-Díaz; Domingo S. Rodríguez-Baena; Isabel A. Nepomuceno-Chamorro; Jesús S. Aguilar-Ruiz (IDEAL, 2006)

A Deterministic Model to Infer Gene Networks from Microarray Data. - Isabel A. Nepomuceno-Chamorro; Jesús S. Aguilar-Ruiz; Norberto Díaz-Díaz; Domingo S. Rodríguez-Baena; Jorge García-Gutiérrez (IDEAL, 2007)

Discovering alpha -Patterns from Gene Expression Data. - Domingo S. Rodríguez-Baena; Norberto Díaz-Díaz; Jesús S. Aguilar-Ruiz; Isabel A. Nepomuceno-Chamorro (IDEAL, 2007)

Gene association analysis: a survey of frequent pattern mining from gene expression data. - Ronnie Alves; Domingo S. Rodríguez-Baena; Jesús S. Aguilar-Ruiz (Briefings Bioinform., 2010)

Pattern Recognition in Biological Time Series. - Francisco Gómez-Vela; Francisco Martínez-Álvarez; Carlos D. Barranco; Norberto Díaz-Díaz; Domingo S. Rodríguez-Baena; Jesús S. Aguilar-Ruiz (CAEPIA, 2011)

Gene Regulatory Networks Validation Framework Based in KEGG. - Norberto Díaz-Díaz; Francisco Gómez-Vela; Domingo S. Rodríguez-Baena; Jesús S. Aguilar-Ruiz (HAIS (2), 2011)

A biclustering algorithm for extracting bit-patterns from binary datasets. - Domingo S. Rodríguez-Baena; Antonio J. Pérez-Pulido; Jesús S. Aguilar-Ruiz (Bioinform., 2011)

CarGene: Characterisation of sets of genes based on metabolic pathways analysis. - Jesús S. Aguilar-Ruiz; Domingo S. Rodríguez-Baena; Norberto Díaz-Díaz; Isabel A. Nepomuceno-Chamorro (Int. J. Data Min. Bioinform., 2011)

Extracting and validating biclusters from binary datasets. - Domingo S. Rodríguez-Baena (AI Commun., 2013)

Bioinformatics from a Big Data Perspective: Meeting the Challenge. - Francisco Gómez-Vela; Aurelio López; José Antonio Lagares; Domingo S. Baena; Carlos D. Barranco; Miguel García-Torres; Federico Divina (IWBBIO (2), 2017)

BIGO: A web application to analyse gene enrichment analysis results. - Aurelio López-Fernández; Domingo S. Rodríguez-Baena; Francisco Gómez-Vela; Norberto Díaz-Díaz (Comput. Biol. Chem., 2018)

Structure Optimization for Large Gene Networks Based on Greedy Strategy. - Francisco Gómez-Vela; Domingo S. Rodríguez-Baena; Jose Luis Vazquez Noguera (Comput. Math. Methods Medicine, 2018)

Ensemble and Greedy Approach for the Reconstruction of Large Gene Co-Expression Networks. - Francisco Gómez-Vela; Fernando M. Delgado-Chaves; Domingo S. Rodríguez-Baena; Miguel García-Torres; Federico Divina (Entropy, 2019)

Identifying livestock behavior patterns based on accelerometer dataset. - Domingo S. Rodríguez-Baena; Francisco Gómez-Vela; Miguel García-Torres; Federico Divina; Carlos D. Barranco; Norberto Díaz-Díaz; Manuel Jiménez; Gema Montalvo (J. Comput. Sci., 2020)

A multi-GPU biclustering algorithm for binary datasets. - Aurelio López-Fernández; Domingo S. Rodríguez-Baena; Francisco Gómez-Vela; Federico Divina; Miguel García-Torres (J. Parallel Distributed Comput., 2021)

A new approach for the construction of historical databases - NoSQL Document-oriented databases: the example of AtlantoCracies. - Manuel Diaz-Ordoñez; Domingo Savio Rodríguez Baena; Bartolomé Yun-Casalilla (Digit. Scholarsh. Humanit., 2023)

Computational Ensemble Gene Co-Expression Networks for the Analysis of Cancer Biomarkers. - Julia Figueroa-Martínez; Dulcenombre M. Saz-Navarro; Aurelio López-Fernández; Domingo S. Rodríguez-Baena; Francisco Antonio Gómez Vela (Informatics, 2024)

CyEnGNet - App: A new Cytoscape app for the reconstruction of large co-expression networks using an ensemble approach. - Dulcenombre M. Saz-Navarro; Aurelio López-Fernández; Francisco Antonio Gómez Vela; Domingo S. Rodríguez-Baena (SoftwareX, 2024)

Optimized Python library for reconstruction of ensemble-based gene co-expression networks using multi-GPU. - Aurelio López-Fernández; Francisco Antonio Gómez Vela; María del Saz-Navarro; Fernando M. Delgado-Chaves; Domingo S. Rodríguez-Baena (J. Supercomput., 2024)

Biclustering in bioinformatics using big data and High Performance Computing applications: challenges and perspectives, a review. - Aurelio López-Fernández; Francisco Antonio Gómez Vela; Domingo S. Rodríguez-Baena; Fernando M. Delgado-Chaves; Jorge González-Domínguez (J. Supercomput., 2025)

BinRec: addressing data sparsity and cold-start challenges in recommender systems with biclustering. - Domingo S. Rodríguez-Baena; Francisco Gómez-Vela; Aurelio López-Fernández; Miguel García-Torres; Federico Divina (Appl. Intell., 2025)