Non-coding RNAs in Ciona intestinalis. - Kristin Missal; Dominic Rose; Peter F. Stadler (ECCB/JBI, 2005)

Duplicated RNA genes in teleost Fish genomes. - Dominic Rose; Julian Jöris; Jörg Hackermüller; Kristin Reiche; Qiang Li; Peter F. Stadler (J. Bioinform. Comput. Biol., 2008)

The long and the short of computational ncRNA prediction - Dominic Rose (2010)

Computational discovery of human coding and non-coding transcripts with conserved splice sites. - Dominic Rose; Michael Hiller; Katharina Schutt; Jörg Hackermüller; Rolf Backofen; Peter F. Stadler (Bioinform., 2011)

GraphClust: alignment-free structural clustering of local RNA secondary structures. - Steffen Heyne; Fabrizio Costa; Dominic Rose; Rolf Backofen (Bioinform., 2012)

Scalable structural clustering of local RNA secondary structures. - Fabrizio Costa; Steffen Heyne; Dominic Rose; Rolf Backofen (CMSR@ECCB, 2014)

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles. - Pavankumar Videm; Dominic Rose; Fabrizio Costa; Rolf Backofen (Bioinform., 2014)