MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update). - Lukás Pravda; David Sehnal; Dominik Tousek; Veronika Navrátilová; Václav Bazgier; Karel Berka; Radka Svobodová Vareková; Jaroslav Koca; Michal Otyepka (Nucleic Acids Res., 2018)

ChannelsDB: database of biomacromolecular tunnels and pores. - Lukás Pravda; David Sehnal; Radka Svobodová Vareková; Veronika Navrátilová; Dominik Tousek; Karel Berka; Michal Otyepka; Jaroslav Koca (Nucleic Acids Res., 2018)

ValTrendsDB: bringing Protein Data Bank validation information closer to the user. - Vladimír Horský; Veronika Bendová; Dominik Tousek; Jaroslav Koca; Radka Svobodová Vareková (Bioinform., 2019)

Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges. - Tomás Racek; Ondrej Schindler; Dominik Tousek; Vladimír Horský; Karel Berka; Jaroslav Koca; Radka Svobodová Vareková (Nucleic Acids Res., 2020)