A genetic algorithm for the automated generation of small organic molecules: Drug design using an evolutionary algorithm. - Dominique Douguet; Etienne Thoreau; Gérard Grassy (J. Comput. Aided Mol. Des., 2000)

Easier threading through web-based comparisons and cross-validations. - Dominique Douguet; Gilles Labesse (Bioinform., 2001)

DOCKGROUND resource for studying protein-protein interfaces. - Dominique Douguet; Huei-Chi Chen; Andrey Tovchigrechko; Ilya A. Vakser (Bioinform., 2006)

HELIQUEST: a web server to screen sequences with specific alpha-helical properties. - Romain Gautier; Dominique Douguet; Bruno Antonny; Guillaume Drin (Bioinform., 2008)

Large-Scale Structural Modeling of protein complexes at Low Resolution. - Zhengwei Zhu 001; Andrey Tovchigrechko; Tatiana Baronova; Ying Gao; Dominique Douguet; Nicholas O'Toole; Ilya A. Vakser (J. Bioinform. Comput. Biol., 2008)

e-LEA3D: a computational-aided drug design web server. - Dominique Douguet (Nucleic Acids Res., 2010)

e-Drug3D: 3D structure collections dedicated to drug repurposing and fragment-based drug design. - Emilie Pihan; Lionel Colliandre; Jean-François Guichou; Dominique Douguet (Bioinform., 2012)

Computational and biophysical approaches to protein-protein interaction inhibition of Plasmodium falciparum AMA1/RON2 complex. - Emilie Pihan; Roberto F. Delgadillo; Michelle L. Tonkin; Martine Pugnière; Maryse Lebrun; Martin J. Boulanger; Dominique Douguet (J. Comput. Aided Mol. Des., 2015)

SENSAAS-Flex: a joint optimization approach for aligning 3D shapes and exploring the molecular conformation space. - Hamza Biyuzan; Mohamed-Akram Masrour; Lucas Grandmougin; Frédéric Payan; Dominique Douguet (Bioinform., 2024)