JaDis: computing distances between nucleic acid sequences. - Isabelle Gonçalves; Marc Robinson-Rechavi; Guy Perrière; Dominique Mouchiroud (Bioinform., 1999)

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. - Loïc Ponger; Dominique Mouchiroud (Bioinform., 2002)

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. - Céline Keime; Francesca Damiola; Dominique Mouchiroud; Laurent Duret; Olivier Gandrillon (BMC Bioinform., 2004)

HOPPSIGEN: a database of human and mouse processed pseudogenes. - Adel Khelifi; Laurent Duret; Dominique Mouchiroud (Nucleic Acids Res., 2005)

Unexpected observations after mapping LongSAGE tags to the human genome. - Céline Keime; Marie Sémon; Dominique Mouchiroud; Laurent Duret; Olivier Gandrillon (BMC Bioinform., 2007)