Ontology-Based Data Integration For Biomedical Research. - Vipul Kashyap; Kei-Hoi Cheung; Donald Doherty; Matthias Samwald; M. Scott Marshall; Joanne Luciano; Susie Stephens; Ivan Herman; Raymond Hookway (The Semantic Web: Real-World Applications from Industry, 2007)

Advancing translational research with the Semantic Web. - Alan Ruttenberg; Tim Clark; William J. Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; et al. (BMC Bioinform., 2007)

Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform. - Subhashini Sivagnanam; Wyatt Gorman; Donald Doherty; Samuel A. Neymotin; Stephen Fang; Hermine Hovhannisyan; William W. Lytton; Salvador Dura-Bernal (PEARC, 2020)