Multivariate visual explanation for high dimensional datasets. - Scott Barlowe; Tianyi Zhang; Yujie Liu 009; Jing Yang 001; Donald J. Jacobs (IEEE VAST, 2008)

Conformational Entropy of an Ideal Cross-Linking Polymer Chain. - Oleg K. Vorov; Dennis R. Livesay; Donald J. Jacobs (Entropy, 2008)

Best Probability Density Function for Random Sampled Data. - Donald J. Jacobs (Entropy, 2009)

A Signal Processing Method to Explore Similarity in Protein Flexibility. - Simina Vasilache; Nazanin Mirshahi; Soo-Yeon Ji; James Mottonen; Donald J. Jacobs; Kayvan Najarian (Adv. Bioinformatics, 2010)

Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game. - Luis C. González; Dennis R. Livesay; Donald J. Jacobs (BCB, 2011)

WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics. - Scott Barlowe; Yujie Liu 009; Jing Yang 001; Dennis R. Livesay; Donald J. Jacobs; James Mottonen; Deeptak Verma (Comput. Graph. Forum, 2011)

Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged. - Deeptak Verma; Donald J. Jacobs; Dennis R. Livesay (PLoS Comput. Biol., 2012)

A visual analytics approach to exploring protein flexibility subspaces. - Scott Barlowe; Jing Yang 001; Donald J. Jacobs; Dennis R. Livesay; Jamal Alsakran; Ye Zhao 003; Deeptak Verma; James Mottonen (PacificVis, 2013)

Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity. - Deeptak Verma; Donald J. Jacobs; Dennis R. Livesay (PLoS Comput. Biol., 2013)

A virtual pebble game to ensemble average graph rigidity. - Luis C. González; Hui Wang; Dennis R. Livesay; Donald J. Jacobs (Algorithms Mol. Biol., 2015)

Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments. - Tong Li; Malgorzata B. Tracka; Shahid Uddin; Jose Casas-Finet; Donald J. Jacobs; Dennis R. Livesay (PLoS Comput. Biol., 2015)

JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories. - Charles C. David; Ettayapuram Ramaprasad Azhagiya Singam; Donald J. Jacobs (BMC Bioinform., 2017)

Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories. - Jenny Farmer; Fareeha Kanwal; Nikita Nikulsin; Matthew C. B. Tsilimigras; Donald J. Jacobs (Entropy, 2017)

Universal Sample Size Invariant Measures for Uncertainty Quantification in Density Estimation. - Jenny Farmer; Zach D. Merino; Alexander Gray; Donald J. Jacobs (Entropy, 2019)

Classifying EEG motor imagery signals using supervised projection pursuit for artefact removal. - Tyler Grear; Donald J. Jacobs (SMC, 2021)

Biased Hypothesis Formation From Projection Pursuit. - John Patterson; Chris S. Avery; Tyler Grear; Donald J. Jacobs (Adv. Artif. Intell. Mach. Learn., 2021)

JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit. - Charles C. David; Chris S. Avery; Donald J. Jacobs (BMC Bioinform., 2021)

Victory Tax: A Holistic Income Tax System. - Donald J. Jacobs (Entropy, 2021)

Functional Dynamics of Substrate Recognition in TEM Beta-Lactamase. - Chris S. Avery; Lonnie Baker; Donald J. Jacobs (Entropy, 2022)

PDFEstimator: An R Package for Density Estimation and Analysis. - Jenny Farmer; Donald J. Jacobs (R J., 2022)

MATLAB tool for probability density assessment and nonparametric estimation. - Jenny Farmer; Donald J. Jacobs (SoftwareX, 2022)

Probability Density Estimation through Nonparametric Adaptive Partitioning and Stitching. - Zach D. Merino; Jenny Farmer; Donald J. Jacobs (Algorithms, 2023)