Toward a Systems Biology Software Toolkit. - Donald J. Johann; Michael D. McGuigan; Stanimire Tomov; Eric Blum; Gordon R. Whiteley; Emanuel F. Petricoin; Lance A. Liotta (CBMS, 2004)

Post-digestion 18O Exchange/Labeling for Quantitative Shotgun Proteomics of Membrane Proteins. - Xiaoying Ye; Brian T. Luke; Donald J. Johann; King C. Chan; DaRue Prieto; Akira Ono; Timothy D. Veenstra; Josip Blonder (Quantitative Methods in Proteomics, 2012)

Towards the integration, annotation and association of historical microarray experiments with RNA-seq. - Shweta S. Chavan; Michael A. Bauer 002; Erich A. Peterson; Christoph J. Heuck; Donald J. Johann (BMC Bioinform., 2013)

Leveraging the new with the old: providing a framework for the integration of historic microarray studies with next generation sequencing. - Michael A. Bauer 002; Shweta S. Chavan; Erich A. Peterson; Christoph J. Heuck; Donald J. Johann (BMC Bioinform., 2014)

Revealing the inherent heterogeneity of human malignancies by variant consensus strategies coupled with cancer clonal analysis. - Erich A. Peterson; Shweta S. Chavan; Michael A. Bauer 002; Christoph J. Heuck; Donald J. Johann (BMC Bioinform., 2014)

NPARS - A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science. - Li Ma; Erich A. Peterson; Ik Jae Shin; Jason Muesse; Katy Marino; Matthew A. Steliga; Donald J. Johann (Frontiers Big Data, 2021)