GeneOrder: comparing the order of genes in small genomes. - Raja Mazumder; Ashok S. Kolaskar; Donald Seto (Bioinform., 2001)

Application of Global Computational Tools GeneOrder and OrthologLocator to the Comparative Analyses of Chordopoxvirus Genomes. - Nikhat Zafar; Raja Mazumder; Donald Seto (JCIS, 2002)

CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes. - Nikhat Zafar; Raja Mazumder; Donald Seto (BMC Bioinform., 2002)

Application of global computational tools GeneOrder and CoreGenes to the comparative analyses of chordopoxvirus genomes. - Nikhat Zafar; Raja Mazumder; Donald Seto (Inf. Sci., 2002)

GeneOrder3.0: Software for comparing the order of genes in pairs of small bacterial genomes. - Srikanth Celamkoti; Sashidhara Kundeti; Anjan Purkayastha; Raja Mazumder; Charles Buck; Donald Seto (BMC Bioinform., 2004)

Comparative genomics using web-based GeneOrder to determine synteny and to function as an annotation tool. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2006)

Comparative genomics using CoreGenes to analyze small bacterial genomes, with an application for the annotation of hypothetical proteins. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2007)

Data Mining Pathogen Genomes Using GeneOrder and CoreGenes: Gene Order, Synteny, and Proteomes. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2008)

In silico Proteome Parsing Analysis to Identify Core Sets of Proteins in Bacteriophages to Aid in Their Classification. - Padmanabhan Mahadevan; Donald Seto (BIOCOMP, 2009)

Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: gene order, synteny and in silico proteomes. - Padmanabhan Mahadevan; John F. King; Donald Seto (Int. J. Comput. Biol. Drug Des., 2009)