On the application of integer arithmetic in nucleotide sequence analysis. - Dónall A. Mac Dónaill (Comput. Appl. Biosci., 1995)

On the Scalability of Molecular Computational Solutions to NP Problems. - Dónall A. Mac Dónaill (J. Univers. Comput. Sci., 1996)

Representation of amino acids as five-bit or three-bit patterns for filtering protein databases. - Avril Coghlan; Dónall A. Mac Dónaill; Nigel H. Buttimore (Bioinform., 2001)

Molecularly Accessible Permutations. - Dónall A. Mac Dónaill (ECAL, 2003)

Molecular mappings: Group Theory, coding Theory, and the Emergence of Replication. - Dónall A. Mac Dónaill (Advances in Bioinformatics and Its Applications, 2005)