An Extension of a First-Order Language and Its Applications (Many-Sorted Logic, Distributed Database Design, Resolution, Automatic Theorem Proving, Horizontal Partitioning). - Dong-Guk Shin (1985)

Knowledge-aided engineering environment for design and manufacturing. - Dong-Guk Shin; Fred J. Maryanski (COMPSAC, 1988)

An Expectation-Driven Approach to Q-A Processing. - Dong-Guk Shin; S. K. Wallfesh (ICSI, 1990)

Am/AG Model: a Hierarchical Social System Metaphor for Distributed Problem Solving. - Dong-Guk Shin; Joseph Leone (Int. J. Pattern Recognit. Artif. Intell., 1990)

Fragmenting Relations Horizontally Using a Knowledge-Based Approach. - Dong-Guk Shin; Keki B. Irani (IEEE Trans. Software Eng., 1991)

Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system. - Dong-Guk Shin; Changhwan Lee; Jinghui Zhang; Kenneth E. Rudd; Claire M. Berg (Comput. Appl. Biosci., 1992)

A Context-Sensitive Discretization of Numeric Attributes for Classification Learning. - Changhwan Lee; Dong-Guk Shin (ECAI, 1994)

Achieving Interoperability between Heterogeneous Object-Oriented Genomic Databases. - Dong-Guk Shin; Rohit Gupta; T. C. Ting (HICSS (5), 1994)

Data and Knowledge Base Issues in Genomics: Introduction. - Dong-Guk Shin; François Rechenmann (HICSS (5), 1994)

EEL: An Instance-Based Learning Method for Databases. - Changhwan Lee; Dong-Guk Shin (IEA/AIE, 1994)

An Expection-Driven Response Understanding Paradigm. - Dong-Guk Shin (IEEE Trans. Knowl. Data Eng., 1994)

Comparative study of relational and object-oriented modelings of genomic data. - Dong-Guk Shin (HICSS (5), 1995)

Establishing Logical Connectivity between Query Keywords and Database Contents. - Dong-Guk Shin; Lung-Yung Chu (Canadian AI, 1998)

Automatic query mapping among genomic databases: a pilot exploration. - Kei-Hoi Cheung; Prakash M. Nadkarni; Perry L. Miller; Dong-Guk Shin (AMIA, 1998)

An epistemological display query interface. - Dong-Guk Shin; Wally Grajewski; Lung-Yung Chu (AVI, 1998)

A simple model capable of expressing meta-data for database interoperability. - Kei-Hoi Cheung; Dong-Guk Shin (CATA, 1998)

An effective heuristic algorithm for finding a steiner tree in graphs. - Lung-Yung Chu; Dong-Guk Shin (CATA, 1998)

A lightweight computational model for achieving location transparency in distributed environments. - Richard T. Landers; Dong-Guk Shin (CATA, 1998)

A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. - Kei-Hoi Cheung; Dong-Guk Shin (IADT, 1998)

A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogenous Database Environment. - Jeong Seok Lim; Dong-Guk Shin (IADT, 1998)

Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology. - Dong-Guk Shin; Lei Liu; Leslie M. Loew; James C. Schaff (VDB, 1998)

A metadata approach to query interoperation between molecular biology databases. - Kei-Hoi Cheung; Prakash M. Nadkarni; Dong-Guk Shin (Bioinform., 1998)

A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment. - Jeong Seok Lim; Dong-Guk Shin (J. Database Manag., 1998)

Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases. - Wally Grajewski; Dong-Guk Shin; Lei Liu (CBMS, 1999)

Centroid Trees with Application to String Processing. - Fei Shi; Dong-Guk Shin (Stringology, 1999)

A Multistrategy Approach to Classification Learning in Databases. - Changhwan Lee; Dong-Guk Shin (Data Knowl. Eng., 1999)

Using Hellinger distance in a nearest neighbour classifier for relational databases. - Changhwan Lee; Dong-Guk Shin (Knowl. Based Syst., 1999)

CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams. - Dong-Guk Shin; Ravi Shankar Nori (Advanced Visual Interfaces, 2000)

A Graph-based Meta-data Framework for Interoperation between Genome Databases. - Kei-Hoi Cheung; Dong-Guk Shin (BIBE, 2000)

Comparing Trees in a Phylogenetic Relationship Repository. - John Bluis; Ravi Nori; Hsin-Wei Wang; Pinglei Zhou; J. Peter Gogarten; Dong-Guk Shin (BIBE, 2001)

A Comparative Study for Mining Biological Data. - Taysir Hassan A. Soliman; Dong-Guk Shin (IS, 2002)

Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri. - John Bluis; Dong-Guk Shin (BIBE, 2003)

A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. - Dong-Guk Shin; John Bluis; Yoo Ah Kim; Winfried Krueger; Jeffrey Maddox; Ravi Nori; Nathan Viniconis; Hsin-Wei Wang; Alan Wong; David W. Rowe (BIBE, 2006)

Meta Analysis of Microarray Data Using Gene Regulation Pathways. - Saira Ali Kazmi; Yoo-Ah Kim; Baikang Pei; Ravi Nori; David W. Rowe; Hsin-Wei Wang; Alan Wong; Dong-Guk Shin (BIBM, 2008)

Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information. - Baikang Pei; David W. Rowe; Dong-Guk Shin (BIBM, 2008)

PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. - Dong-Guk Shin; Seung-Hyun Hong; Pujan Joshi; Ravi Nori; Baikang Pei; Hsin-Wei Wang; Patrick Harrington; Lynn Kuo; Ivo Kalajzic; David W. Rowe (IJCBS, 2009)

An Improved Heuristic Approach for the Steiner Problem in Graphs. - Lung-Yung Chu; Dong-Guk Shin (Int. J. Comput. Their Appl., 2009)

Computing Consistency Between Microarray Data and Known Gene Regulation Relationships. - Dong-Guk Shin; Saira Ali Kazmi; Baikang Pei; Yoo-Ah Kim; Jeffrey Maddox; Ravi Nori; Alan Wong; Winfried Krueger; David W. Rowe (IEEE Trans. Inf. Technol. Biomed., 2009)

Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure. - Baikang Pei; Dong-Guk Shin (BIOCOMP, 2010)

Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks. - Saira Ali Kazmi; Yoo-Ah Kim; Dong-Guk Shin (Int. J. Data Min. Bioinform., 2010)

Learning Bayesian networks with integration of indirect prior knowledge. - Baikang Pei; David W. Rowe; Dong-Guk Shin (Int. J. Data Min. Bioinform., 2010)

A Semantic Processing System (SPS) for Biomedical Literature Web Search. - Joseph Leone; Dong-Guk Shin (ICDM (Poster and Industry Proceedings), 2011)

Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models. - Baikang Pei; Dong-Guk Shin (J. Comput. Biol., 2012)

A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. - Pujan Joshi; Baikang Pei; Seung-Hyun Hong; Ivo Kalajzic; Dong-Ju Shin; David W. Rowe; Dong-Guk Shin (BIBM, 2013)

A Phrase-based Ontology Enabled Semantic Processing System for Web Search. - Joseph Leone; Dong-Guk Shin (Trans. Mach. Learn. Data Min., 2013)

Deep pathway analysis incorporating mutation information and gene expression data. - Yue Zhao; Tham H. Hoang; Pujan Joshi; Seung-Hyun Hong; Dong-Guk Shin (BIBM, 2016)

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. - Asa Thibodeau; Eladio J. Márquez; Oscar Luo; Yijun Ruan; Francesca Menghi; Dong-Guk Shin; Michael L. Stitzel; Paola Vera-Licona; Duygu Ucar (PLoS Comput. Biol., 2016)

HFM: Hierarchical Feature Moment Extraction for Multi-Omic Data Visualization. - Timothy James Becker; Dong-Guk Shin (BIBM, 2019)

Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data. - Yue Zhao; Pujan Joshi; Dong-Guk Shin (BIBM, 2019)

TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators. - Asa Thibodeau; Dong-Guk Shin (Bioinform., 2019)

TensorSV: structural variation inference using tensors and variable topology neural networks. - Timothy James Becker; Dong-Guk Shin (BIBM, 2020)

Identification of Key Biological Pathway Routes in Cancer Cohorts. - Pujan Joshi; Brent Basso; Honglin Wang; Seung-Hyun Hong; Charles Giardina; Dong-Guk Shin (BIBM, 2020)

cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. - Honglin Wang; Pujan Joshi; Seung-Hyun Hong; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BIBM, 2020)

A Framework for Route Based Pathway Analysis of Gene Expression Data. - Pujan Joshi; Honglin Wang; Brent Basso; Seung-Hyun Hong; Charles Giardina; Dong-Guk Shin (ICCBB, 2020)

Efficient methods for hierarchical multi-omic feature extraction and visualisation. - Timothy James Becker; Dong-Guk Shin (Int. J. Data Min. Bioinform., 2020)

Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts. - Pujan Joshi; Honglin Wang; Salvatore Jaramillo; Seung-Hyun Hong; Charles Giardina; Dong-Guk Shin (BIBM, 2021)

ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data. - Honglin Wang; Pujan Joshi; Seung-Hyun Hong; Dong-Ju Shin; Dong-Guk Shin (BIBM, 2021)

Structural variation calling and genotyping by moment-based deep convolutional neural networks. - Timothy James Becker; Dong-Guk Shin (Int. J. Data Min. Bioinform., 2021)

Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-Dimensional Omics Data. - Yue Zhao; Dong-Guk Shin (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. - Honglin Wang; Pujan Joshi; Chenyu Zhang 007; Peter F. Maye; David W. Rowe; Dong-Guk Shin (BCB, 2022)

A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes. - Timothy James Becker; Dashzeveg Bayarsaihan; Dong-Guk Shin (BIBM, 2022)

Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease. - Chenyu Zhang 007; Pujan Joshi; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BIBM, 2022)

Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease. - Chenyu Zhang 007; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BIBM, 2023)

AFA: Abstract Functional Analysis Identifies New Microglial Subtypes at Single Cell Level in Alzheimer's Disease. - Chenyu Zhang 007; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (ICCABS, 2023)

Leveraging Mutual Information for Functional Annotation Analysis of Microglia in Alzheimer's Disease. - Chenyu Zhang 007; Qingli Hu; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BCB, 2024)

Resolving multiple structural variation callers and platforms by matrix transformation and imputation. - Timothy James Becker; Michelle Le; Deem Quinn; Yeonsoo Chung; Dong-Guk Shin (BIBM, 2024)

FuncNet: A Machine Learning Framework Capable of Enhancing Neural Cell Type Classification via Functional Subtype Clustering. - Chenyu Zhang 007; Honglin Wang; Seung-Hyun Hong; Riqiang Yan; Dong-Guk Shin (BIBM, 2024)