A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. - Pujan Joshi; Baikang Pei; Seung-Hyun Hong; Ivo Kalajzic; Dong-Ju Shin; David W. Rowe; Dong-Guk Shin (BIBM, 2013)

ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data. - Honglin Wang; Pujan Joshi; Seung-Hyun Hong; Dong-Ju Shin; Dong-Guk Shin (BIBM, 2021)