SigFlux: A novel network feature to evaluate the importance of proteins in signal transduction networks. - Wei Liu; Dong Li 018; Jiyang Zhang 001; Yunping Zhu; Fuchu He (BMC Bioinform., 2006)

A novel parametric approach to mine gene regulatory relationship from microarray datasets. - Wanlin Liu; Dong Li 018; Qijun Liu; Yunping Zhu; Fuchu He (BMC Bioinform., 2010)

Computational identification of rare codons of Escherichia coli based on codon pairs preference. - Xianming Wu; Songfeng Wu; Dong Li 018; Jiyang Zhang 001; Lin Hou; Jie Ma; Wanlin Liu; Daming Ren; Yunping Zhu; Fuchu He (BMC Bioinform., 2010)

Modular analysis of the probabilistic genetic interaction network. - Lin Hou; Lin Wang; Minping Qian; Dong Li 018; Chao Tang; Yunping Zhu; Minghua Deng; Fangting Li (Bioinform., 2011)

Using NMFAS to identify key biological pathways associated with human diseases. - Hao Guo 003; Yunping Zhu; Dong Li 018; Fuchu He; Qijun Liu (ISB, 2012)

Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations. - Wei Liu; Dong Li 018; Yunping Zhu; Hongwei Xie; Fuchu He (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Similarity-based prediction for Anatomical Therapeutic Chemical classification of drugs by integrating multiple data sources. - Zhongyang Liu; Feifei Guo; Jiangyong Gu; Yong Wang; Yang Li; Dan Wang; Liang Lu; Dong Li 018; Fuchu He (Bioinform., 2015)

HisgAtlas 1.0: a human immunosuppression gene database. - Yuan Liu; Mengqi He; Dan Wang; Lihong Diao; Jinying Liu; Li Tang; Shuzhen Guo; Fuchu He; Dong Li 018 (Database J. Biol. Databases Curation, 2017)

AllerGAtlas 1.0: a human allergy-related genes database. - Jinying Liu; Yuan Liu; Dan Wang; Mengqi He; Lihong Diao; Zhongyang Liu; Yang Li; Li Tang; Fuchu He; Dong Li 018; Shuzhen Guo (Database J. Biol. Databases Curation, 2018)

CTR-DB, an omnibus for patient-derived gene expression signatures correlated with cancer drug response. - Zhongyang Liu; Jiale Liu; Xinyue Liu; Xun Wang; Qiaosheng Xie; Xinlei Zhang; Xiangya Kong; Mengqi He; Yuting Yang; Xinru Deng; Lele Yang; Yaning Qi; et al. (Nucleic Acids Res., 2022)

UbiBrowser 2.0: a comprehensive resource for proteome-wide known and predicted ubiquitin ligase/deubiquitinase-substrate interactions in eukaryotic species. - Xun Wang; Yang Li; Mengqi He; Xiangren Kong; Peng Jiang; Xi Liu; Lihong Diao; Xinlei Zhang; Honglei Li; Xinping Ling; Simin Xia; Zhongyang Liu; et al. (Nucleic Acids Res., 2022)

Exploration of Target Spaces in the Human Genome for Protein and Peptide Drugs. - Zhongyang Liu; Honglei Li; Zhaoyu Jin; Yang Li; Feifei Guo; Yangzhige He; Xinyue Liu; Yaning Qi; Liying Yuan; Fuchu He; Dong Li 018 (Genom. Proteom. Bioinform., 2022)

A Yeast BiFC-seq Method for Genome-wide Interactome Mapping. - Limin Shang; Yuehui Zhang; Yuchen Liu; Chaozhi Jin; Yanzhi Yuan; Chunyan Tian; Ming Ni; Xiaochen Bo; Li Zhang 097; Dong Li 018; Fuchu He; Jian Wang (Genom. Proteom. Bioinform., 2022)

DDK-Linker: a network-based strategy identifies disease signals by linking high-throughput omics datasets to disease knowledge. - Xiangren Kong; Lihong Diao; Peng Jiang; Shiyan Nie; Shuzhen Guo; Dong Li 018 (Briefings Bioinform., 2024)

Integration of protein sequence and protein-protein interaction data by hypergraph learning to identify novel protein complexes. - Simin Xia; Dianke Li; Xinru Deng; Zhongyang Liu; Huaqing Zhu; Yuan Liu; Dong Li 018 (Briefings Bioinform., 2024)