Effects of replacing the unreliable cDNA microarray measurements on the disease classification based on gene expression profiles and functional modules. - Dong Wang 011; Yingli Lv; Zheng Guo 002; Xia Li 004; Yanhui Li; Jing Zhu 004; Da Yang 003; Jianzhen Xu; Chenguang Wang 004; Shaoqi Rao; Baofeng Yang (Bioinform., 2006)

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. - Zheng Guo 002; Yongjin Li; Xue Gong; Chen Yao; Wencai Ma; Dong Wang 011; Yanhui Li; Jing Zhu 004; Min Zhang 009; Da Yang 003; Jing Wang 004 (Bioinform., 2007)

Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories. - Da Yang 003; Yanhui Li; Hui Xiao; Qing Liu; Min Zhang 009; Jing Zhu 004; Wencai Ma; Chen Yao; Jing Wang 004; Dong Wang 011; Zheng Guo 002; Baofeng Yang (Bioinform., 2008)

Apparently low reproducibility of true differential expression discoveries in microarray studies. - Min Zhang 009; Chen Yao; Zheng Guo 002; Jinfeng Zou; Lin Zhang; Hui Xiao; Dong Wang 011; Da Yang 003; Xue Gong; Jing Zhu 004; Yanhui Li; Xia Li 004 (Bioinform., 2008)

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. - Zheng Guo 002; Lei Wang; Yongjin Li; Xue Gong; Chen Yao; Wencai Ma; Dong Wang 011; Yanhui Li; Jing Zhu 004; Min Zhang 009; Da Yang 003; Shaoqi Rao; et al. (Bioinform., 2009)

Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. - Min Zhang 009; Lin Zhang; Jinfeng Zou; Chen Yao; Hui Xiao; Qing Liu; Jing Wang 004; Dong Wang 011; Chenguang Wang 004; Zheng Guo 002 (Bioinform., 2009)

Extensive increase of microarray signals in cancers calls for novel normalization assumptions. - Dong Wang 011; Lixin Cheng; Mingyue Wang; Ruihong Wu; Pengfei Li 002; Bin Li; Yuannv Zhang; Yunyan Gu; Wenyuan Zhao; Chenguang Wang 004; Zheng Guo 002 (Comput. Biol. Chem., 2011)

ViRBase: a resource for virus-host ncRNA-associated interactions. - Yanhui Li; Changliang Wang; Zhengqiang Miao; Xiaoman Bi; Deng Wu; Nana Jin; Liqiang Wang; Hao Wu; Kun Qian; Chunhua Li 004; Ting Zhang; Chunrui Zhang 003; et al. (Nucleic Acids Res., 2015)

RAID v2.0: an updated resource of RNA-associated interactions across organisms. - Ying Yi; Yue Zhao; Chunhua Li 004; Lin Zhang; Huiying Huang; Yana Li; Lanlan Liu; Ping Hou; Tianyu Cui; Puwen Tan; Yongfei Hu; Ting Zhang; et al. (Nucleic Acids Res., 2017)

RNALocate: a resource for RNA subcellular localizations. - Ting Zhang; Puwen Tan; Liqiang Wang; Nana Jin; Yana Li; Lin Zhang; Huan Yang; Zhenyu Hu; Lining Zhang; Chunyu Hu; Chunhua Li 004; Kun Qian; et al. (Nucleic Acids Res., 2017)

iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC. - Zhen-Dong Su 001; Yan Huang; Zhao-Yue Zhang; Ya-Wei Zhao; Dong Wang 011; Wei Chen 064; Kuo-Chen Chou; Hao Lin 001 (Bioinform., 2018)

MNDR v2.0: an updated resource of ncRNA-disease associations in mammals. - Tianyu Cui; Lin Zhang; Yan Huang; Ying Yi; Puwen Tan; Yue Zhao; Yongfei Hu; Liyan Xu; Enmin Li; Dong Wang 011 (Nucleic Acids Res., 2018)

RIscoper: a tool for RNA-RNA interaction extraction from the literature. - Yang Zhang 125; Tianyuan Liu; Liqun Chen; Jinxurong Yang; Jiayi Yin; Yuncong Zhang; Zhixi Yun; Hao Xu; Lin Ning 002; Feng-Biao Guo; Yongshuai Jiang; Hao Lin 001; et al. (Bioinform., 2019)

Exploiting locational and topological overlap model to identify modules in protein interaction networks. - Lixin Cheng; Pengfei Liu; Dong Wang 011; Kwong-Sak Leung (BMC Bioinform., 2019)

RNAInter in 2020: RNA interactome repository with increased coverage and annotation. - Yunqing Lin; Tianyuan Liu; Tianyu Cui; Zhao Wang; Yuncong Zhang; Puwen Tan; Yan Huang; Jia Yu; Dong Wang 011 (Nucleic Acids Res., 2020)

Design powerful predictor for mRNA subcellular location prediction in Homo sapiens. - Zhao-Yue Zhang; Yu-He Yang; Hui Ding 005; Dong Wang 011; Wei Chen 064; Hao Lin 001 (Briefings Bioinform., 2021)

cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function. - Yan Huang; Jing Wang 004; Yue Zhao; Huafeng Wang; Tianyuan Liu; Yuhe Li; Tianyu Cui; Weiyi Li; Yige Feng; Jiaxin Luo; Jiaqi Gong; Lin Ning 002; et al. (Nucleic Acids Res., 2021)

MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. - Lin Ning 002; Tianyu Cui; Boyang Zheng; Nuo Wang; Jiaxin Luo; Beilei Yang; Mengze Du; Jun Cheng; Yiying Dou; Dong Wang 011 (Nucleic Acids Res., 2021)

Cellinker: a platform of ligand-receptor interactions for intercellular communication analysis. - Yang Zhang 125; Tianyuan Liu; Jing Wang 004; Bohao Zou; Le Li; Linhui Yao; Kechen Chen; Lin Ning 002; Bingyi Wu; Xiaoyang Zhao; Dong Wang 011 (Bioinform., 2021)

FibROAD: a manually curated resource for multi-omics level evidence integration of fibrosis research. - Yu-Zhe Sun; Yong-Fei Hu; Yan Zhang; Shu-yi Wei; Bei-Lei Yang; Ying-Ping Xu; Zhi-Li Rong; Dong Wang 011; Bin Yang (Database J. Biol. Databases Curation, 2022)

ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation. - Jun Cheng; Yunqing Lin; Linfu Xu; Kechen Chen; Qi Li; Kaixin Xu; Lin Ning 002; Juanjuan Kang; Tianyu Cui; Yan Huang; Xiaoyang Zhao; Dong Wang 011; et al. (Nucleic Acids Res., 2022)

RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. - Tianyu Cui; Yiying Dou; Puwen Tan; Zhen Ni; Tianyuan Liu; Duolin Wang; Yan Huang; Kaican Cai; Xiaoyang Zhao; Dong Xu 002; Hao Lin 001; Dong Wang 011 (Nucleic Acids Res., 2022)

RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. - Juanjuan Kang; Qiang Tang 013; Jun He; Le Li; Nianling Yang; Shuiyan Yu; Mengyao Wang; Yuchen Zhang; Jiahao Lin; Tianyu Cui; Yongfei Hu; Puwen Tan; et al. (Nucleic Acids Res., 2022)

RNAPhaSep: a resource of RNAs undergoing phase separation. - Haibo Zhu; Hao Fu; Tianyu Cui; Lin Ning 002; Huaguo Shao; Yehan Guo; Yanting Ke; Jiayi Zheng; Hongyan Lin; Xin Wu; Guanghao Liu; Jun He; et al. (Nucleic Acids Res., 2022)

LncReader: identification of dual functional long noncoding RNAs using a multi-head self-attention mechanism. - Tianyuan Liu; Bohao Zou; Manman He; Yongfei Hu; Yiying Dou; Tianyu Cui; Puwen Tan; Shaobin Li; Shuan Rao; Yan Huang; Sixi Liu; Kaican Cai; et al. (Briefings Bioinform., 2023)

RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction. - Jia Chen; Jiahao Lin; Yongfei Hu; Meijun Ye; Linhui Yao; Le Wu; Wenhai Zhang; Meiyi Wang; Tingting Deng; Feng Guo; Yan Huang; Bofeng Zhu; et al. (Nucleic Acids Res., 2023)

Deep learning-driven survival prediction in pan-cancer studies by integrating multimodal histology-genomic data. - Yongfei Hu; Xinyu Li; Ying Yi; Yan Huang; Guangyu Wang; Dong Wang 011 (Briefings Bioinform., 2025)