ADAGE signature analysis: differential expression analysis with data-defined gene sets. - Jie Tan; Matt Huyck; Dongbo Hu; René A. Zelaya; Deborah A. Hogan; Casey S. Greene (BMC Bioinform., 2017)

Open collaborative writing with Manubot. - Daniel S. Himmelstein; Vincent Rubinetti; David R. Slochower; Dongbo Hu; Venkat S. Malladi; Casey S. Greene; Anthony Gitter (PLoS Comput. Biol., 2019)

Precision Motion Measurement for Linear Motor Based on FNCC and Phase Difference M-Estimator Robust Regression in a VLSM System. - Dongbo Hu; Jiwen Zhao; Xing Yang 004; Xiaohu Zhang (IEEE Trans. Instrum. Meas., 2022)

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses. - Alexandra J. Lee; Dallas L. Mould; Jake Crawford; Dongbo Hu; Rani K. Powers; Georgia Doing; James C. Costello; Deborah A. Hogan; Casey S. Greene (Genom. Proteom. Bioinform., 2022)

MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes. - Ricardo Avila; Vincent Rubinetti; Xinghua Zhou; Dongbo Hu; Zhongchao Qian; Marco Alvarado Cano; Everaldo Rodrigo Rodolpho; Ginger Tsueng; Casey S. Greene; Chunlei Wu (Nucleic Acids Res., 2023)